RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PRSS21Q9Y6M0 314 aa10.09□□□□□ -0.79
SMG1-208ENST00000563448 ZFC3H1O60293 1989 aaKnown RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 TMEM120BA0PK00 339 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 PFDN6O15212 129 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 PRPF4O43172 522 aaKnown RBP eCLIP10.08□□□□□ -0.8
SMG1-208ENST00000563448 PHGDHO43175 533 aaKnown RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 ATG13O75143 517 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 TM7SF2O76062 418 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 TOP3BO95985 862 aaKnown RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 SOD1P00441 154 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 C2P06681 752 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 DGKEP52429 567 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 CDKN2DP55273 166 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ZXDAP98168 799 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 POU4F1Q01851 419 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ZNF460Q14592 562 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ZKSCAN8Q15776 578 aaPredicted RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 SEL1L3Q68CR1 1132 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 CDHR3Q6ZTQ4 885 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ZNF765Q7L2R6 523 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 FAM124AQ86V42 546 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 KBTBD6Q86V97 674 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 PJA1Q8NG27 643 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 MDM1Q8TC05 714 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 NAT14Q8WUY8 206 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 CLDN23Q96B33 292 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ALKBH8Q96BT7 664 aaKnown RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 ULK4Q96C45 1275 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 APOPT1Q96IL0 206 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 NECAB3Q96P71 396 aaPredicted RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 ZSCAN5AQ9BUG6 496 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ITM2CQ9NQX7 267 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 SMOXQ9NWM0 555 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 ZDHHC3Q9NYG2 299 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 NCKAP1Q9Y2A7 1128 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 VPS9D1Q9Y2B5 631 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 VWA7Q9Y334 891 aa10.08□□□□□ -0.8
SMG1-208ENST00000563448 TP53BP1Q12888 1972 aaPredicted RBP10.08□□□□□ -0.8
SMG1-208ENST00000563448 A0A096LPK6 155 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 RNGTTO60942 597 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 MPOP05164 745 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 PKMP14618 531 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 STMN1P16949 149 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 ZNF7P17097 686 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 FDXRP22570 491 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 RPS3P23396 243 aaKnown RBP eCLIP10.07□□□□□ -0.8
SMG1-208ENST00000563448 RPA3P35244 121 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 PPARGP37231 505 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 TPMTP51580 245 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 ADARP55265 1226 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 RAB10P61026 200 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 B4GALNT1Q00973 533 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 IRF9Q00978 393 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 DPTQ07507 201 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 ILF2Q12905 390 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 FGL2Q14314 439 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 ITIH4Q14624 930 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 AGERQ15109 404 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 ZNF284Q2VY69 593 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 SETMARQ53H47 684 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 TMEM31Q5JXX7 168 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 GPRC6AQ5T6X5 926 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 NLRP8Q86W28 1048 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 RBFAQ8N0V3 343 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 PLD6Q8N2A8 252 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 PGBD3Q8N328 593 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 ARFGAP2Q8N6H7 521 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 BTN2A2Q8WVV5 523 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 VPS35Q96QK1 796 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TTC1Q99614 292 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 OSBPL6Q9BZF3 934 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 SLC13A1Q9BZW2 595 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 VPS11Q9H270 941 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 C12orf65Q9H3J6 166 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 MKS1Q9NXB0 559 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 USP36Q9P275 1121 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 SMG5Q9UPR3 1016 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 MED16Q9Y2X0 877 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 IGLV3-16A0A075B6K0 115 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3DA0A087WVF3 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3IA0A087WXS9 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3EA0A087X179 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3KA0A087X1G2 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3FA6NER0 549 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 PRR23AA6NEV1 266 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3LB9A6J9 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 K7ESM1 405 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 STK25O00506 426 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 COPEO14579 308 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 PRMT5O14744 637 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 WISP3O95389 354 aaPredicted RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3HP0C7X1 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 SLC35E2BP0CK96 405 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 CHN1P15882 459 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 SLC18A1P54219 525 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 SFSWAPQ12872 951 aaKnown RBP10.07□□□□□ -0.8
SMG1-208ENST00000563448 TMEM259Q4ZIN3 620 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3GQ6DHY5 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 TBC1D3CQ6IPX1 549 aa10.07□□□□□ -0.8
SMG1-208ENST00000563448 KIAA1161Q6NSJ0 714 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms