RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 DYRK4Q9NR20 520 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 ELFN1P0C7U0 828 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 ZNF37AP17032 561 aaPredicted RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 ZNF7P17097 686 aaPredicted RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 CHRM3P20309 590 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 PPARGP37231 505 aaPredicted RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 ENPP2Q13822 863 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 PON2Q15165 354 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 IER5LQ5T953 404 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 ATG16L1Q676U5 607 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 LIPIQ6XZB0 460 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 SUGP1Q8IWZ8 645 aaKnown RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 RBFAQ8N0V3 343 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 SLC30A3Q99726 388 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 SPATA16Q9BXB7 569 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 CLPBQ9H078 707 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 MRPL46Q9H2W6 279 aaKnown RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 FAM83DQ9H4H8 585 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 POPDC3Q9HBV1 291 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 PRSS21Q9Y6M0 314 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 AGAP14A8MT82 685 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 TARM1B6A8C7 271 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 C1QTNF3-AMACRE9PGA6 284 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 VPS26AO75436 327 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 EGFP01133 1207 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 MYL2P10916 166 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 ADRB3P13945 408 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 LIG3P49916 1009 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 STX3Q13277 289 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 ITGA9Q13797 1035 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 LYPLAL1Q5VWZ2 237 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 KLC3Q6P597 504 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 SPATA21Q7Z572 469 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 CCDC91Q7Z6B0 441 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 CACNA2D3Q8IZS8 1091 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 SIDT2Q8NBJ9 832 aaKnown RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 CDX2Q99626 313 aaPredicted RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 C20orf27Q9GZN8 174 aa21.1■□□□□ 0.97
CLN3-209ENST00000561689 SARS2Q9NP81 518 aaKnown RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 OAS3Q9Y6K5 1087 aaKnown RBP21.1■□□□□ 0.97
CLN3-209ENST00000561689 TICRRQ7Z2Z1 1910 aa21.09■□□□□ 0.97
CLN3-209ENST00000561689 RALBP11234 206 aa21.09■□□□□ 0.97
CLN3-209ENST00000561689 SLC26A3P40879 764 aa21.09■□□□□ 0.97
CLN3-209ENST00000561689 PFKPQ01813 784 aa21.09■□□□□ 0.97
CLN3-209ENST00000561689 ZYG11AQ6WRX3 759 aa21.09■□□□□ 0.97
CLN3-209ENST00000561689 MRPL57Q9BQC6 102 aaKnown RBP21.09■□□□□ 0.97
CLN3-209ENST00000561689 E5RI56 91 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 PYGLP06737 847 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 KPNA2P52292 529 aaKnown RBP21.08■□□□□ 0.97
CLN3-209ENST00000561689 ACOX1Q15067 660 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 PTRHD1Q6GMV3 140 aaKnown RBP21.08■□□□□ 0.97
CLN3-209ENST00000561689 ERN2Q76MJ5 926 aaKnown RBP21.08■□□□□ 0.97
CLN3-209ENST00000561689 CCDC197Q8NCU1 140 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 RAB3IL1Q8TBN0 382 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 RDH11Q8TC12 318 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 KCNJ9Q92806 393 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 RIOK2Q9BVS4 552 aaKnown RBP21.08■□□□□ 0.97
CLN3-209ENST00000561689 PHF7Q9BWX1 381 aaPredicted RBP21.08■□□□□ 0.97
CLN3-209ENST00000561689 TMPRSS11EQ9UL52 423 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 PCDHB1Q9Y5F3 818 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 SCN8AQ9UQD0 1980 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 F5P12259 2224 aa21.08■□□□□ 0.97
CLN3-209ENST00000561689 NEMP1O14524 444 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 ZBTB14O43829 449 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 SYNCRIPO60506 623 aaKnown RBP21.08■□□□□ 0.96
CLN3-209ENST00000561689 CD1DP15813 335 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 ITGB6P18564 788 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 TFEBP19484 476 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 P2RY2P41231 377 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 CNTN1Q12860 1018 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 ACAP2Q15057 778 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 TECRLQ5HYJ1 363 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 TECPR1Q7Z6L1 1165 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 GIMAP7Q8NHV1 300 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 GRAMD1AQ96CP6 724 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 ALG9Q9H6U8 611 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 TRPV5Q9NQA5 729 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 ACSS2Q9NR19 701 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 OXSMQ9NWU1 459 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 TRMT6Q9UJA5 497 aaKnown RBP21.08■□□□□ 0.96
CLN3-209ENST00000561689 MID2Q9UJV3 735 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 COQ6Q9Y2Z9 468 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 COMMD10Q9Y6G5 202 aa21.08■□□□□ 0.96
CLN3-209ENST00000561689 ANKRD65E5RJM6 399 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 H3BMM5 538 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 AREL1O15033 823 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 ITM2AO43736 263 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 NARSO43776 548 aaKnown RBP21.07■□□□□ 0.96
CLN3-209ENST00000561689 DLX3O60479 287 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 SNNO75324 88 aaPredicted RBP21.07■□□□□ 0.96
CLN3-209ENST00000561689 SERPINE1P05121 402 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 GM2AP17900 193 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 SATB1Q01826 763 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 ELP6Q0PNE2 266 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 CAMK2GQ13555 558 aaPredicted RBP21.07■□□□□ 0.96
CLN3-209ENST00000561689 KIAA1211LQ6NV74 962 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 ISCA2Q86U28 154 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 RALGPS2Q86X27 583 aaPredicted RBP21.07■□□□□ 0.96
CLN3-209ENST00000561689 PLCD3Q8N3E9 789 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 CD200R1Q8TD46 325 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms