RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TCF19Q9Y242 345 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 CHD4Q14839 1912 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 PDS5AQ29RF7 1337 aaKnown RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 ABCC6O95255 1503 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 ASPDHA6ND91 283 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 GOLGA6L9A6NEM1 432 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 TMEM202A6NGA9 273 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 TACC1O75410 805 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 PAK4O96013 591 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 DDX5P17844 614 aaKnown RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 RRM1P23921 792 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 USP8P40818 1118 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 FMO5P49326 533 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 CRIP2P52943 208 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 CDH15P55291 814 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 PPP2R5BQ15173 497 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 KRT24Q2M2I5 525 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 EIF2S3LQ2VIR3 472 aaKnown RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 DSG4Q86SJ6 1040 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 DHX40Q8IX18 779 aaKnown RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 SLC35F3Q8IY50 421 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 DUX3Q96PT4 197 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 TRMT61BQ9BVS5 477 aaKnown RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 TTYH1Q9H313 450 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 PLEKHA5Q9HAU0 1116 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 KLHL1Q9NR64 748 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 C20orf141Q9NUB4 165 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 HCN3Q9P1Z3 774 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 FBXO9Q9UK97 447 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 GAB2Q9UQC2 676 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 AMDHD2Q9Y303 409 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 LSM4Q9Y4Z0 139 aaKnown RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 CPSF1Q10570 1443 aaKnown RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 LY75O60449 1722 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 ANKRD26Q9UPS8 1709 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 TOGARAM1Q9Y4F4 1720 aa4.94□□□□□ -1.62
PRPF39-209ENST00000556353 CENPJQ9HC77 1338 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-209ENST00000556353 TAF1LQ8IZX4 1826 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 GAGE10A6NGK3 116 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 CAPN9O14815 690 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 CYC1P08574 325 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 IRF1P10914 325 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 HLA-DOBP13765 273 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 GNL1P36915 607 aaPredicted RBP4.93□□□□□ -1.62
PRPF39-209ENST00000556353 CRB1P82279 1406 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 PPFIA1Q13136 1202 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 KCTD18Q6PI47 426 aaPredicted RBP4.93□□□□□ -1.62
PRPF39-209ENST00000556353 GFRALQ6UXV0 394 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 LDHAL6AQ6ZMR3 332 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 RRM2BQ7LG56 351 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 TMEM219Q86XT9 240 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 TDRPQ86YL5 185 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 WDR63Q8IWG1 891 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.93□□□□□ -1.62
PRPF39-209ENST00000556353 CIARTQ8N365 385 aaPredicted RBP4.93□□□□□ -1.62
PRPF39-209ENST00000556353 ZBTB2Q8N680 514 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 BBS10Q8TAM1 723 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 SLC20A1Q8WUM9 679 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 HEMGNQ9BXL5 484 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 CSTL1Q9H114 145 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 RALYQ9UKM9 306 aaKnown RBP4.93□□□□□ -1.62
PRPF39-209ENST00000556353 ITGB4P16144 1822 aa4.93□□□□□ -1.62
PRPF39-209ENST00000556353 VIRMAQ69YN4 1812 aaKnown RBP4.93□□□□□ -1.62
PRPF39-209ENST00000556353 TFP02787 698 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 CFC1BP0CG36 223 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 CFC1P0CG37 223 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 MAOAP21397 527 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 S1PR1P21453 382 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 SHMT1P34896 483 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 CCR5P51681 352 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 EFNA5P52803 228 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 HNRNPH2P55795 449 aaKnown RBP4.92□□□□□ -1.62
PRPF39-209ENST00000556353 PITX1P78337 314 aaPredicted RBP4.92□□□□□ -1.62
PRPF39-209ENST00000556353 FOXD4Q12950 439 aaPredicted RBP4.92□□□□□ -1.62
PRPF39-209ENST00000556353 SLC45A4Q5BKX6 768 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 PLA2G4FQ68DD2 849 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 TXNDC8Q6A555 127 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 TRNP1Q6NT89 227 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 METTL2BQ6P1Q9 378 aaKnown RBP4.92□□□□□ -1.62
PRPF39-209ENST00000556353 FBXO46Q6PJ61 603 aaPredicted RBP4.92□□□□□ -1.62
PRPF39-209ENST00000556353 KMT5CQ86Y97 462 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 ANKRD18AQ8IVF6 992 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 KLHDC8BQ8IXV7 354 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 HERVK_113Q902F9 699 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 METTL2AQ96IZ6 378 aaKnown RBP4.92□□□□□ -1.62
PRPF39-209ENST00000556353 PSMD1Q99460 953 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 SH3GL2Q99962 352 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 HERPUD2Q9BSE4 406 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 GPR108Q9NPR9 543 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 TMEM30AQ9NV96 361 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 TAAR2Q9P1P5 351 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 HSPB7Q9UBY9 170 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 PADI1Q9ULC6 663 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 GPR52Q9Y2T5 361 aa4.92□□□□□ -1.62
PRPF39-209ENST00000556353 OVOS2A0A0G2JMS6 1433 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 OVOS2A0A0J9YW53 1432 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 OVOS2Q6IE36 1432 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 IFIT1P09914 478 aaKnown RBP4.91□□□□□ -1.62
PRPF39-209ENST00000556353 KRT10P13645 584 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms