RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TXLNGQ9NUQ3 528 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 IL36RNQ9UBH0 155 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CFDP1Q9UEE9 299 aaPredicted RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 STK39Q9UEW8 545 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 GIMAP2Q9UG22 337 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 PPIEQ9UNP9 301 aaKnown RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 TRPV2Q9Y5S1 764 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CPED1A4D0V7 1026 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 A6NL46 340 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 UBE2CO00762 179 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 SOCS6O14544 535 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 WNT9BO14905 357 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 PLRG1O43660 514 aaKnown RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 DKC1O60832 514 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS29-205ENST00000548539 NDUFS7O75251 213 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 DAB1O75553 588 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 RSL1D1O76021 490 aaKnown RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 ZWINTO95229 277 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 CH25HO95992 272 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 C21orf33P30042 268 aaPredicted RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 BDKRB2P30411 391 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 RFX2P48378 723 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 LIG4P49917 911 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 HTR6P50406 440 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 CSNK2A1P68400 391 aaPredicted RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 ABATP80404 500 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 GRIK2Q13002 908 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 GRAPQ13588 217 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 CCDC96Q2M329 555 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 RARS2Q5T160 578 aaKnown RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 NSUN5P2Q63ZY6 315 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 ADALQ6DHV7 355 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 WDR73Q6P4I2 378 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 KCTD18Q6PI47 426 aaPredicted RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 C9orf47Q6ZRZ4 202 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 PLPPR4Q7Z2D5 763 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 HACE1Q8IYU2 909 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 BEST3Q8N1M1 668 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 SYT2Q8N9I0 419 aaPredicted RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 CSNK2A3Q8NEV1 391 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 OR2AK2Q8NG84 335 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 GSDMBQ8TAX9 411 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 TRPC4APQ8TEL6 797 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 ADAMTS14Q8WXS8 1223 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 LRRC59Q96AG4 307 aaKnown RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 RHBDF1Q96CC6 855 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 TMCO6Q96DC7 493 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 LRFN5Q96NI6 719 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 CDRT15Q96T59 188 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 CSF3RQ99062 836 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 DDOQ99489 341 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 BAG1Q99933 345 aaPredicted RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 SLC35C2Q9NQQ7 365 aa4.11□□□□□ -1.75
VPS29-205ENST00000548539 EXO1Q9UQ84 846 aaKnown RBP4.11□□□□□ -1.75
VPS29-205ENST00000548539 LOC102723996A0A087X1L8 192 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 KANSL1LA0AUZ9 987 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 LNP1A1A4G5 178 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 LINC01553A4QN01 128 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 OR6C75A6NL08 312 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 EIF4E1BA6NMX2 242 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 MAP2K7O14733 419 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 SMAD9O15198 467 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 PSMD10O75832 226 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 ABCB1P08183 1280 aaPredicted RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 DDX5P17844 614 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 SSTR2P30874 369 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 HOXA11P31270 313 aaPredicted RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 CAPZA2P47755 286 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 MMP14P50281 582 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 ROR2Q01974 943 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 FOXM1Q08050 763 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 DDR1Q08345 913 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 SPOCK1Q08629 439 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 CTF1Q16619 201 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 PPP6R3Q5H9R7 873 aaPredicted RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 SPECC1Q5M775 1068 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 DCST1Q5T197 706 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 ERMARDQ5T6L9 678 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 ADGRA1Q86SQ6 560 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 RASGEF1CQ8N431 466 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 MINDY1Q8N5J2 469 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 PCDH20Q8N6Y1 951 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 POMGNT2Q8NAT1 580 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 POGLUT1Q8NBL1 392 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 MCUQ8NE86 351 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 OR14A16Q8NHC5 309 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 SECISBP2LQ93073 1101 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 PTERQ96BW5 349 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 THOC3Q96J01 351 aaKnown RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 CMKLR1Q99788 373 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 SH3GL2Q99962 352 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 DCLK3Q9C098 648 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 C17orf75Q9HAS0 396 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 MARCH4Q9P2E8 410 aaPredicted RBP4.1□□□□□ -1.75
VPS29-205ENST00000548539 B3GALT5Q9Y2C3 310 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 PCDHGA5Q9Y5G8 931 aa4.1□□□□□ -1.75
VPS29-205ENST00000548539 KAT6BQ8WYB5 2073 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 SPINT2O43291 252 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 DIAPH2O60879 1101 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 ITGB8P26012 769 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms