RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ARL14EPQ8N8R7 260 aaPredicted RBP18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 PAK6Q9NQU5 681 aaPredicted RBP18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 IL17CQ9P0M4 197 aa18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 TMEM181Q9P2C4 612 aa18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 ZNF225Q9UK10 706 aa18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 CROTQ9UKG9 612 aa18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 TIMM22Q9Y584 194 aa18.39■□□□□ 0.53
PRPF40B-208ENST00000548436 IQCF5A8MTL0 148 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 GFRA2O00451 464 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 CTPS1P17812 591 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 CD9P21926 228 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 RAB33AQ14088 237 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 IKBKEQ14164 716 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TXNDC8Q6A555 127 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 UGT3A1Q6NUS8 523 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 HACD2Q6Y1H2 254 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TAS2R42Q7RTR8 314 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ANKRD33Q7Z3H0 272 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 CPNE9Q8IYJ1 553 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ESAMQ96AP7 390 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TUBGCP3Q96CW5 907 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 LINGO1Q96FE5 620 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TMEM169Q96HH4 297 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 BTBD9Q96Q07 612 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 C1QTNF3Q9BXJ4 246 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 DNMT3BQ9UBC3 853 aaKnown RBP18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ZNF711Q9Y462 761 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TRIM17Q9Y577 477 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 SCN8AQ9UQD0 1980 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 STX16O14662 325 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 PFDN6O15212 129 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ALPIP09923 528 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 CHRM3P20309 590 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 PRMT2P55345 433 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 IL2P60568 153 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 FOLH1Q04609 750 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 IL23RQ5VWK5 629 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 FAM117BQ6P1L5 589 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 Q6ZNB5 142 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 LYSMD3Q7Z3D4 306 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 SYVN1Q86TM6 617 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TICAM1Q8IUC6 712 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TMEM126BQ8IUX1 230 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 APLFQ8IW19 511 aaPredicted RBP18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 HJURPQ8NCD3 748 aaPredicted RBP18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 TTC16Q8NEE8 873 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ZNF483Q8TF39 744 aaPredicted RBP18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 KCNJ9Q92806 393 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ATP6V1E2Q96A05 226 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 LRCH3Q96II8 777 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 SARS2Q9NP81 518 aaKnown RBP18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 MRPL40Q9NQ50 206 aaKnown RBP18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 HACD3Q9P035 362 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 MAP10Q9P2G4 905 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 PCTPQ9UKL6 214 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 ASB1Q9Y576 335 aa18.38■□□□□ 0.53
PRPF40B-208ENST00000548436 C9JVG2 144 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 NR5A2O00482 541 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 RNASEH2AO75792 299 aaKnown RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 PARNO95453 639 aaKnown RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 LATS1O95835 1130 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 HGFP14210 728 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 LBPP18428 481 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 RARS2Q5T160 578 aaKnown RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 FOXB2Q5VYV0 432 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 SLC39A5Q6ZMH5 540 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 APCDD1Q8J025 514 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 MIER2Q8N344 545 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 OR6K2Q8NGY2 324 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 CCDC97Q96F63 343 aaPredicted RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 ZNF558Q96NG5 402 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 HERC2P3Q9BVR0 1158 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 TM6SF2Q9BZW4 377 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 YIPF3Q9GZM5 350 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 P2RY12Q9H244 342 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 PDP2Q9P2J9 529 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 GMPR2Q9P2T1 348 aaKnown RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 EPS15L1Q9UBC2 864 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 ASB3Q9Y575 518 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 INSL5Q9Y5Q6 135 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 DNAJA2O60884 412 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 C8BP07358 591 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 CAPN3P20807 821 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 PTGER3P43115 390 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 EPHB3P54753 998 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 ADARP55265 1226 aaKnown RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 TLE2Q04725 743 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 CDH18Q13634 790 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 VPS26BQ4G0F5 336 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 PITRM1Q5JRX3 1037 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 C6orf10Q5SRN2 563 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 GPSM1Q86YR5 675 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 CAMK1DQ8IU85 385 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 TMEM102Q8N9M5 508 aaPredicted RBP18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 SLC45A3Q96JT2 553 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 GPR63Q9BZJ6 419 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 IL21Q9HBE4 155 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 OGDHLQ9ULD0 1010 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 PKP3Q9Y446 797 aa18.37■□□□□ 0.53
PRPF40B-208ENST00000548436 CPQQ9Y646 472 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms