RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 HK2P52789 917 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 LIPEQ05469 1076 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 UBXN11Q5T124 520 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 MAPK15Q8TD08 544 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 FUBP3Q96I24 572 aaKnown RBP eCLIP15.58■□□□□ 0.08
CUX1-211ENST00000546411 SMAD5Q99717 465 aaKnown RBP15.58■□□□□ 0.08
CUX1-211ENST00000546411 KIFC1Q9BW19 673 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 AKTIPQ9H8T0 292 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 POLR3BQ9NW08 1133 aaPredicted RBP15.58■□□□□ 0.08
CUX1-211ENST00000546411 CHCHD3Q9NX63 227 aaKnown RBP15.58■□□□□ 0.08
CUX1-211ENST00000546411 TCRBV5S1A1TA0A578 114 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 LRRC14BA6NHZ5 514 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 NEDD8-MDP1E9PL57 170 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 ZNF865P0CJ78 1059 aaPredicted RBP15.58■□□□□ 0.08
CUX1-211ENST00000546411 MAD2L1Q13257 205 aaPredicted RBP15.58■□□□□ 0.08
CUX1-211ENST00000546411 CANT1Q8WVQ1 401 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 UGT2B28Q9BY64 529 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 PADI4Q9UM07 663 aa15.58■□□□□ 0.08
CUX1-211ENST00000546411 PDLIM1O00151 329 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ZBTB11O95625 1053 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 ALOX15P16050 662 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 MTA1Q13330 715 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 KCTD21Q4G0X4 260 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 GLYATQ6IB77 296 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 C2orf73Q8N5S3 287 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 ADCY4Q8NFM4 1077 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 DYRK1BQ9Y463 629 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 OR2AG2A6NM03 316 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 SYN3O14994 580 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 NPHS1O60500 1241 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 CST1P01037 141 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 SLC35E2BP0CK96 405 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 CD68P34810 354 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 POLR2JP52435 117 aaKnown RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 SETMARQ53H47 684 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 GPR107Q5VW38 600 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 TMEM26Q6ZUK4 368 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 TMEM132CQ8N3T6 1108 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 OR2T34Q8NGX1 318 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 OR2T3Q8NH03 318 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 PYCR2Q96C36 320 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 PTPN18Q99952 460 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ZNF490Q9ULM2 529 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 EOMESO95936 686 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 CYP4B1P13584 511 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 POLR2EP19388 210 aaKnown RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 ATP1A4Q13733 1029 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 SPIDRQ14159 915 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 SFT2D3Q587I9 215 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 TXNDC8Q6A555 127 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 B3GNT6Q6ZMB0 384 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 SERPINA9Q86WD7 417 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 PGBD3Q8N328 593 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ACVR1CQ8NER5 493 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ARNTL2Q8WYA1 636 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 LZICQ8WZA0 190 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 PPP3R2Q96LZ3 170 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 C20orf27Q9GZN8 174 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 PTGDR2Q9Y5Y4 395 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ARSDP51689 593 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 NR1H2P55055 460 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 NUP107P57740 925 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 MTPNP58546 118 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 RBM23Q86U06 439 aaKnown RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 ZMIZ2Q8NF64 920 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ST13P5Q8NFI4 369 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 IGSF8Q969P0 613 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 GPR62Q9BZJ7 368 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 ASAH2Q9NR71 780 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 MARCH4Q9P2E8 410 aaPredicted RBP15.57■□□□□ 0.08
CUX1-211ENST00000546411 TRPC4Q9UBN4 977 aa15.57■□□□□ 0.08
CUX1-211ENST00000546411 TRAV19A0A0A6YYK7 116 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 GLYATL1P3A0A0U1RQE8 302 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 INHAP05111 366 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 CCNFP41002 786 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 IDH2P48735 452 aaKnown RBP15.56■□□□□ 0.08
CUX1-211ENST00000546411 CDH4P55283 916 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 POLR2LP62875 67 aaKnown RBP15.56■□□□□ 0.08
CUX1-211ENST00000546411 ZNF789Q5FWF6 425 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 TMEM214Q6NUQ4 689 aaKnown RBP15.56■□□□□ 0.08
CUX1-211ENST00000546411 OR2T12Q8NG77 320 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 PANX1Q96RD7 426 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 FADS3Q9Y5Q0 445 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 A0A0U1RQS6 177 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 AOC2O75106 756 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 GM2AP17900 193 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 NR4A1P22736 598 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 PAX3P23760 479 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 GDF5P43026 501 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 CYP4F8P98187 520 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 HMGCS1Q01581 520 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 ZCCHC8Q6NZY4 707 aaKnown RBP15.56■□□□□ 0.08
CUX1-211ENST00000546411 FBXL19Q6PCT2 694 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 UBE2R2Q712K3 238 aaPredicted RBP15.56■□□□□ 0.08
CUX1-211ENST00000546411 TMCO5AQ8N6Q1 288 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 OLIG1Q8TAK6 271 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 CCDC106Q9BWC9 280 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 ALG2Q9H553 416 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 MTX2O75431 263 aa15.56■□□□□ 0.08
CUX1-211ENST00000546411 GKP32189 559 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms