RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TRNAU1APQ9NX07 287 aaKnown RBP4.73□□□□□ -1.65
LIMS1-214ENST00000542845 SUCOQ9UBS9 1254 aaKnown RBP4.73□□□□□ -1.65
LIMS1-214ENST00000542845 CNOT8Q9UFF9 292 aaKnown RBP4.73□□□□□ -1.65
LIMS1-214ENST00000542845 USP25Q9UHP3 1055 aa4.73□□□□□ -1.65
LIMS1-214ENST00000542845 SNX7Q9UNH6 387 aa4.73□□□□□ -1.65
LIMS1-214ENST00000542845 TRAF3IP3Q9Y228 551 aa4.73□□□□□ -1.65
LIMS1-214ENST00000542845 PRKAB1Q9Y478 270 aa4.73□□□□□ -1.65
LIMS1-214ENST00000542845 KLF2Q9Y5W3 355 aaPredicted RBP4.73□□□□□ -1.65
LIMS1-214ENST00000542845 ZGRF1Q86YA3 2104 aa4.73□□□□□ -1.65
LIMS1-214ENST00000542845 PIKFYVEQ9Y2I7 2098 aa4.73□□□□□ -1.65
LIMS1-214ENST00000542845 PRRC2CQ9Y520 2896 aaKnown RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 MYO7BQ6PIF6 2116 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SSU72P8A0A1W2PR75 194 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 TMEM200CA6NKL6 621 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 I6L893 689 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 MASP2O00187 686 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CCL21O00585 134 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 KIF1CO43896 1103 aaKnown RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CEACAM4O75871 244 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 TMCC1O94876 653 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ASMTLO95671 621 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 GHRHP01286 108 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 HOXC4P09017 264 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 FAM157BP0CG42 384 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 EPB41P11171 864 aaKnown RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 LPOP22079 712 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 TRIM23P36406 574 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 MMP12P39900 470 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 USP8P40818 1118 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 NDST2P52849 883 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 RRADP55042 308 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 MTA1Q13330 715 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ATP1A4Q13733 1029 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 KCNAB1Q14722 419 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ZNF630Q2M218 657 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 FOXD4L6Q3SYB3 417 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CACHD1Q5VU97 1274 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 RAET1GQ6H3X3 334 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 PWWP2BQ6NUJ5 590 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SHC4Q6S5L8 630 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 FOXD4L3Q6VB84 417 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 LIPIQ6XZB0 460 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ZNF783Q6ZMS7 281 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 BNC2Q6ZN30 1099 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 FAM92BQ6ZTR7 304 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 FAM183BPQ6ZVS7 135 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 MED25Q71SY5 747 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CHST15Q7LFX5 561 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 TMEM110Q86TL2 294 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SLC9B2Q86UD5 537 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CUZD1Q86UP6 607 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CAMK1DQ8IU85 385 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 PASD1Q8IV76 773 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ZNF683Q8IZ20 524 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 UBR7Q8N806 425 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ITLN2Q8WWU7 325 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 VOPP1Q96AW1 172 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SH3KBP1Q96B97 665 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 INTS4Q96HW7 963 aaKnown RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 CNDP1Q96KN2 507 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 C9orf72Q96LT7 481 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 NT5C1BQ96P26 610 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 TRAPPC9Q96Q05 1148 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SLC2A13Q96QE2 648 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 OR2M4Q96R27 311 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SMAD5Q99717 465 aaKnown RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 BRD8Q9H0E9 1235 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 RBSNQ9H1K0 784 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SYNCQ9H7C4 482 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ZFYVE1Q9HBF4 777 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ZBTB20Q9HC78 741 aaPredicted RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 PDE7BQ9NP56 450 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SEMA3GQ9NS98 782 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 SIDT1Q9NXL6 827 aaKnown RBP4.72□□□□□ -1.65
LIMS1-214ENST00000542845 UBP1Q9NZI7 540 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 C5AR2Q9P296 337 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ZNHIT2Q9UHR6 403 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 ATP8A1Q9Y2Q0 1164 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 PCDHGC4Q9Y5F7 938 aa4.72□□□□□ -1.65
LIMS1-214ENST00000542845 KIAA1324LA8MWY0 1029 aaPredicted RBP4.71□□□□□ -1.66
LIMS1-214ENST00000542845 C19orf84I3L1E1 186 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 CETN3O15182 167 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 DDX3YO15523 660 aaKnown RBP4.71□□□□□ -1.66
LIMS1-214ENST00000542845 KCNN4O15554 427 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 GRID2O43424 1007 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 MED7O43513 233 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 KDELR3O43731 214 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 CUTAO60888 179 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 HSF2BPO75031 334 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 JRKO75564 520 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 PF4P02776 101 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 ALPPP05187 535 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 KLK3P07288 261 aaPredicted RBP4.71□□□□□ -1.66
LIMS1-214ENST00000542845 C8BP07358 591 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 FGF5P12034 268 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 CD33P20138 364 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 KLK2P20151 261 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 OTX2P32243 289 aa4.71□□□□□ -1.66
LIMS1-214ENST00000542845 ETFBP38117 255 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms