RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ARNTP27540 789 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 FOXN2P32314 431 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 FASTKD1Q53R41 847 aaKnown RBP16.97■□□□□ 0.31
LIG1-204ENST00000542460 LDLRAP1Q5SW96 308 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 TPRG1LQ5T0D9 272 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 STEAP4Q687X5 459 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 MACC1Q6ZN28 852 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 TAS2R42Q7RTR8 314 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 RELL1Q8IUW5 271 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 NXPE1Q8N323 547 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 DDHD1Q8NEL9 900 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 GDAP1Q8TB36 358 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.97■□□□□ 0.31
LIG1-204ENST00000542460 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.97■□□□□ 0.315e-11■■■■■ 94.1
LIG1-204ENST00000542460 WDR92Q96MX6 357 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 NUSAP1Q9BXS6 441 aaKnown RBP16.97■□□□□ 0.31
LIG1-204ENST00000542460 TRIM39Q9HCM9 518 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 CATSPERZQ9NTU4 200 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 GON4LQ3T8J9 2241 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 SDK1Q7Z5N4 2213 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 TNRC6BQ9UPQ9 1833 aaKnown RBP16.97■□□□□ 0.31
LIG1-204ENST00000542460 PLXNA2O75051 1894 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 TMEM202A6NGA9 273 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 KHNYNO15037 678 aaKnown RBP16.96■□□□□ 0.31
LIG1-204ENST00000542460 CD3EAPO15446 510 aaKnown RBP16.96■□□□□ 0.31
LIG1-204ENST00000542460 CA5AP35218 305 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 CDKN1CP49918 316 aaPredicted RBP16.96■□□□□ 0.31
LIG1-204ENST00000542460 CCDC6Q16204 474 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 KIF19Q2TAC6 998 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 GPRC6AQ5T6X5 926 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 LYPLAL1Q5VWZ2 237 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 PSAPL1Q6NUJ1 521 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 CERS6Q6ZMG9 384 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 CCNI2Q6ZMN8 369 aaPredicted RBP16.96■□□□□ 0.31
LIG1-204ENST00000542460 TRIM74Q86UV6 250 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 SPATS2Q86XZ4 545 aaKnown RBP16.96■□□□□ 0.31
LIG1-204ENST00000542460 PIANPQ8IYJ0 282 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 OR56A4Q8NGH8 313 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 TTC1Q99614 292 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 ZDHHC5Q9C0B5 715 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 PLAC1Q9HBJ0 212 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 C20orf96Q9NUD7 363 aaPredicted RBP16.96■□□□□ 0.31
LIG1-204ENST00000542460 MYLKQ15746 1914 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 SCN8AQ9UQD0 1980 aa16.96■□□□□ 0.31
LIG1-204ENST00000542460 TNFRSF10CO14798 259 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 LRP3O75074 770 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 ASMTLO95671 621 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 SYPP08247 313 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 ZNF806P0C7X5 589 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 PRSS56P0CW18 603 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 MCM3P25205 808 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 ACRV1P26436 265 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 PPARGP37231 505 aaPredicted RBP16.96■□□□□ 0.3
LIG1-204ENST00000542460 CTSKP43235 329 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 BNC1Q01954 994 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 THOC5Q13769 683 aaKnown RBP16.96■□□□□ 0.3
LIG1-204ENST00000542460 FRG1Q14331 258 aaKnown RBP16.96■□□□□ 0.3
LIG1-204ENST00000542460 FZD2Q14332 565 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 SLMAPQ14BN4 828 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 AARS2Q5JTZ9 985 aaKnown RBP16.96■□□□□ 0.3
LIG1-204ENST00000542460 MRNIPQ6NTE8 343 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 NEPROQ6NW34 567 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 WDR93Q6P2C0 686 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 ENPP7Q6UWV6 458 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 MICALCLQ6ZW33 695 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 SDCCAG8Q86SQ7 713 aaPredicted RBP16.96■□□□□ 0.3
LIG1-204ENST00000542460 PARGQ86W56 976 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 SERPINA9Q86WD7 417 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 LMNTD2Q8IXW0 634 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 GSDMBQ8TAX9 411 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 HEXDCQ8WVB3 486 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 C9orf72Q96LT7 481 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 TTC25Q96NG3 672 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 COPS8Q99627 209 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 ERVMER34-1Q9H9K5 563 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 VPS18Q9P253 973 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 SLC17A4Q9Y2C5 497 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 TMEM98Q9Y2Y6 226 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 SNX11Q9Y5W9 270 aa16.96■□□□□ 0.3
LIG1-204ENST00000542460 OAS3Q9Y6K5 1087 aaKnown RBP16.96■□□□□ 0.3
LIG1-204ENST00000542460 GOLGA8KD6RF30 607 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 GOLGA8TH3BQL2 631 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 ARHGAP33O14559 1287 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 VEGFDO43915 354 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 CEACAM5P06731 702 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 GSTA2P09210 222 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 IRX4P78413 519 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 TMEM115Q12893 351 aaPredicted RBP16.95■□□□□ 0.3
LIG1-204ENST00000542460 GRIK2Q13002 908 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 DOK6Q6PKX4 331 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 IL27RAQ6UWB1 636 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 C3orf62Q6ZUJ4 267 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 KCNMB4Q86W47 210 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 GPR150Q8NGU9 434 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 GABPB2Q8TAK5 448 aaPredicted RBP16.95■□□□□ 0.3
LIG1-204ENST00000542460 CALML6Q8TD86 181 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 CERS2Q96G23 380 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 ZCCHC2Q9C0B9 1178 aaKnown RBP16.95■□□□□ 0.3
LIG1-204ENST00000542460 SMOC1Q9H4F8 434 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 ARFGAP3Q9NP61 516 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms