RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SIN3BO75182 1162 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 TCN1P20061 433 aaPredicted RBP7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 FGFR3P22607 806 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 ATP6V1E1P36543 226 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 MAGEA3P43357 314 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 ETV1P50549 477 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 BFSP2Q13515 415 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 PTK2BQ14289 1009 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 BSPRYQ5W0U4 402 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 NANOGP8Q6NSW7 305 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 TSPYL5Q86VY4 417 aaPredicted RBP7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 TP53INP2Q8IXH6 220 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 ZNF784Q8NCA9 323 aaPredicted RBP7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 ZNF540Q8NDQ6 660 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 SLC44A1Q8WWI5 657 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 C12orf43Q96C57 262 aaKnown RBP7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 COLEC11Q9BWP8 271 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 UNKQ9C0B0 810 aaKnown RBP7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 PLAC1Q9HBJ0 212 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 EPS15L1Q9UBC2 864 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 CDC14AQ9UNH5 594 aa7.97□□□□□ -1.13
PDLIM5-221ENST00000542407 MYO16Q9Y6X6 1858 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 A8MU76 341 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 HACD1B0YJ81 288 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 CFAP99D6REC4 459 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 ATP6V1G2-DDX39BF2Z307 99 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 LINC01387J3KSC0 135 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 SLC9A3R1O14745 358 aaPredicted RBP7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 DCXO43602 365 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 NDUFA2O43678 99 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 METTL18O95568 372 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 TOP3BO95985 862 aaKnown RBP7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 C1QAP02745 245 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 GLAP06280 429 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 CD46P15529 392 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 ZNF12P17014 697 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 ARL4AP40617 200 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 HCAR3P49019 387 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 PKNOX1P55347 436 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 CSNK2BP67870 215 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 BNIP3Q12983 259 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 FLOT2Q14254 428 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 SLC39A12Q504Y0 691 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 PDE12Q6L8Q7 609 aaKnown RBP7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 PGM2L1Q6PCE3 622 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 TMPRSS9Q7Z410 1059 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 SCD5Q86SK9 330 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 HEATR4Q86WZ0 1026 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 PDIK1LQ8N165 341 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 USP13Q92995 863 aaPredicted RBP7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 ISOC1Q96CN7 298 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 FAR2Q96K12 515 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 MNTQ99583 582 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 PKP2Q99959 881 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 TMEM79Q9BSE2 394 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 DHRS4Q9BTZ2 278 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 DDIT4Q9NX09 232 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 TBC1D14Q9P2M4 693 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 MBD2Q9UBB5 411 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 TEX264Q9Y6I9 313 aa7.96□□□□□ -1.13
PDLIM5-221ENST00000542407 A0A1W2PPW3 197 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 VNN2O95498 520 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 CXCL10P02778 98 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 APEHP13798 732 aaKnown RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 DNAJB2P25686 324 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 ELK3P41970 407 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 OR1G1P47890 313 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 RPS3AP61247 264 aaKnown RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 PLD1Q13393 1074 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 ADGRE1Q14246 886 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 TRIM16LQ309B1 348 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF829Q3KNS6 432 aaPredicted RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 TIGD2Q4W5G0 525 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 PTAR1Q7Z6K3 402 aaPredicted RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 RALGPS2Q86X27 583 aaPredicted RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 CDH26Q8IXH8 852 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 PHTF2Q8N3S3 785 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 ATP6V0D2Q8N8Y2 350 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 NETO2Q8NC67 525 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 ZSCAN18Q8TBC5 510 aaPredicted RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 TFB1MQ8WVM0 346 aaKnown RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 HPS1Q92902 700 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 CLP1Q92989 425 aaKnown RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 VWCEQ96DN2 955 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 CMTM5Q96DZ9 223 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 CCDC138Q96M89 665 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 RANBP9Q96S59 729 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 LGMNQ99538 433 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 FERMT1Q9BQL6 677 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 NUSAP1Q9BXS6 441 aaKnown RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 KLC2Q9H0B6 622 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 KLHL25Q9H0H3 589 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC35C2Q9NQQ7 365 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 RAB6BQ9NRW1 208 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 IGSF9Q9P2J2 1179 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 ENOPH1Q9UHY7 261 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 MYRFQ9Y2G1 1151 aa7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 PRG3Q9Y2Y8 225 aaPredicted RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 DNMT3AQ9Y6K1 912 aaPredicted RBP7.96□□□□□ -1.14
PDLIM5-221ENST00000542407 FNDC1Q4ZHG4 1894 aaPredicted RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms