RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 FATE1Q969F0 183 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 SH3KBP1Q96B97 665 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 AHCYL2Q96HN2 611 aaKnown RBP7.22□□□□□ -1.25
YBX3-209ENST00000540747 NAP1L5Q96NT1 182 aaPredicted RBP7.22□□□□□ -1.25
YBX3-209ENST00000540747 PLEKHG4BQ96PX9 1271 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 TBC1D10AQ9BXI6 508 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 TDRD1Q9BXT4 1180 aaKnown RBP7.22□□□□□ -1.25
YBX3-209ENST00000540747 ULBP3Q9BZM4 244 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 HSD3B7Q9H2F3 369 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 ZNF768Q9H5H4 540 aaKnown RBP7.22□□□□□ -1.25
YBX3-209ENST00000540747 RMI1Q9H9A7 625 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 LRRC4CQ9HCJ2 640 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 SCHIP1Q9P0W5 487 aaPredicted RBP7.22□□□□□ -1.25
YBX3-209ENST00000540747 TMEM63CQ9P1W3 806 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 CPNE7Q9UBL6 633 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 TLK1Q9UKI8 766 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 POLHQ9Y253 713 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 KCNK6Q9Y257 313 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 PRKAB1Q9Y478 270 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 SLC30A1Q9Y6M5 507 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 FBN2P35556 2912 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 APCP25054 2843 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 MED13Q9UHV7 2174 aa7.22□□□□□ -1.25
YBX3-209ENST00000540747 ZNF106Q9H2Y7 1883 aaKnown RBP7.21□□□□□ -1.25
YBX3-209ENST00000540747 GOLGA6CA6NDK9 693 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 GOLGA6BA6NDN3 693 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 OR5K4A6NMS3 321 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 H3BRJ5 948 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CHUKO15111 745 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 INPP4BO15327 924 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 NUAK1O60285 661 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 SEMA7AO75326 666 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CREG1O75629 220 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 ATP1A1P05023 1023 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 GOLGA6DP0CG33 693 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 ACP5P13686 325 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 SLC2A4P14672 509 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 FERP16591 822 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 XRCC1P18887 633 aaPredicted RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 GNLYP22749 145 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 IL4RP24394 825 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 DLSTP36957 453 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 LEPRP48357 1165 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 SPINT3P49223 89 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 RPL26P61254 145 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 SH3BP2P78314 561 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 SEMA5AQ13591 1074 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 IL11RAQ14626 422 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.21□□□□□ -1.26
YBX3-209ENST00000540747 FKBP15Q5T1M5 1219 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CCDC183Q5T5S1 534 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 MARC1Q5VT66 337 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 E4F1Q66K89 784 aaPredicted RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 TXNRD3NBQ6F5E7 133 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 PPP1R2P3Q6NXS1 205 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 TMCO3Q6UWJ1 677 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 RBM43Q6ZSC3 357 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 TMEM26Q6ZUK4 368 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CHST15Q7LFX5 561 aaPredicted RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 KDELC2Q7Z4H8 507 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 PLXDC1Q8IUK5 500 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 LRRC49Q8IUZ0 686 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 ATPAF2Q8N5M1 289 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 PAF1Q8N7H5 531 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 TEX19Q8NA77 164 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 AVL9Q8NBF6 648 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 GALNT6Q8NCL4 622 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 NEK11Q8NG66 645 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 FAM71BQ8TC56 605 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 KLHL6Q8WZ60 621 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 EID2BQ96D98 161 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 TRIM55Q9BYV6 548 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 BRD8Q9H0E9 1235 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CARD9Q9H257 536 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 ZWILCHQ9H900 591 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 PCDH18Q9HCL0 1135 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 SEPT11Q9NVA2 429 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 FANCLQ9NW38 375 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 GOLGA6AQ9NYA3 693 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 ZNF624Q9P2J8 865 aaPredicted RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 NFKBIL1Q9UBC1 381 aaPredicted RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 EPHA6Q9UF33 1036 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CNOT8Q9UFF9 292 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 KLHL3Q9UH77 587 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 DNPEPQ9ULA0 475 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 MYO6Q9UM54 1294 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 RPL26L1Q9UNX3 145 aaKnown RBP7.21□□□□□ -1.26
YBX3-209ENST00000540747 MAP4K5Q9Y4K4 846 aa7.21□□□□□ -1.26
YBX3-209ENST00000540747 CACNA1DQ01668 2161 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 POLQO75417 2590 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 RGSL1A5PLK6 1076 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 WIPF3A6NGB9 483 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 C21orf140B9A014 251 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 DDX3XO00571 662 aaKnown RBP eCLIP7.2□□□□□ -1.26
YBX3-209ENST00000540747 KIF1CO43896 1103 aaKnown RBP7.2□□□□□ -1.26
YBX3-209ENST00000540747 SPAG6O75602 509 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 CEACAM4O75871 244 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 DNAJB5O75953 348 aa7.2□□□□□ -1.26
YBX3-209ENST00000540747 RNF8O76064 485 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms