RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 NDUFB10O96000 172 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 JCHAINP01591 159 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 RFX3P48380 749 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 POU4F3Q15319 338 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 PXDC1Q5TGL8 231 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CFAP77Q6ZQR2 320 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CHERPQ8IWX8 916 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 AQP12AQ8IXF9 295 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ABRAQ8N0Z2 381 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ZNF433Q8N7K0 673 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 OR6C4Q8NGE1 309 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 OR5K1Q8NHB7 308 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FBXL20Q96IG2 436 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 EXOC2Q96KP1 924 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 PURBQ96QR8 312 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 IFT22Q9H7X7 185 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 TBC1D17Q9HA65 648 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DCP1AQ9NPI6 582 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 MFHAS1Q9Y4C4 1052 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 EPHB6O15197 1021 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 PRODHO43272 600 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 AQP9O43315 295 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 CRTAPO75718 401 aaPredicted RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 RAD17O75943 681 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 FARS2O95363 451 aaKnown RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 JUNDP17535 347 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 IMPDH1P20839 514 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 MAP2K3P46734 347 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 GPR15P49685 360 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 DLGAP5Q15398 846 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 VPS26BQ4G0F5 336 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 ZNF720Q7Z2F6 126 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 ZNF572Q7Z3I7 529 aaPredicted RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 GPR180Q86V85 440 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 GATA6Q92908 595 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 PPP3R2Q96LZ3 170 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 TEFMQ96QE5 360 aaKnown RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 PRKD2Q9BZL6 878 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 POLR2J2Q9GZM3 115 aaKnown RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 DNAJB9Q9UBS3 223 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 A0A087X0B3 334 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 A0A0G2JLW4 131 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 NT5C1B-RDH14C9J2C7 533 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 AZIN1O14977 448 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 PER2O15055 1255 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 SLC22A2O15244 555 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 RLN2P04090 185 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 RAP2AP10114 183 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 EFNA5P52803 228 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 GSTM4Q03013 218 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 INSCQ1MX18 579 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 TOR1AIP1Q5JTV8 583 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 ZNF548Q8NEK5 533 aaPredicted RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 OR8K5Q8NH50 307 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 BARD1Q99728 777 aaKnown RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 TNKS2Q9H2K2 1166 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 RAVER2Q9HCJ3 691 aaKnown RBP8.71□□□□□ -1.01
YBX3-208ENST00000540447 ZNF639Q9UID6 485 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 ANGPT4Q9Y264 503 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 TRAF6Q9Y4K3 522 aa8.71□□□□□ -1.01
YBX3-208ENST00000540447 RRN3P2A6NIE6 340 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 BTN3A1O00481 513 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 DNAJA2O60884 412 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 CHRM5P08912 532 aaPredicted RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 NR2C2P49116 596 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 RAB5CP51148 216 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 TWF1Q12792 350 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 MOGSQ13724 837 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 NDUFAF5Q5TEU4 345 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 EMC10Q5UCC4 262 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 GPALPP1Q8IXQ4 340 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 OR5T3Q8NGG3 340 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 SH3RF3Q8TEJ3 882 aaPredicted RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 PTERQ96BW5 349 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 NXPE2Q96DL1 559 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 EBNA1BP2Q99848 306 aaKnown RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 ADGRE3Q9BY15 652 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ZNF302Q9NR11 478 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 TAS2R13Q9NYV9 303 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 PRAMEF22A3QJZ6 481 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 TCP10L2B9ZVM9 353 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 UBE2Q2LH0YL09 131 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 RNF225M0QZC1 329 aaPredicted RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 CRADDP78560 199 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 GNASQ5JWF2 1037 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 SLFN11Q7Z7L1 901 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ACBD4Q8NC06 268 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 CANT1Q8WVQ1 401 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ITCHQ96J02 903 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 FCRL4Q96PJ5 515 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 TRPV4Q9HBA0 871 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 USP29Q9HBJ7 922 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 PAK1IP1Q9NWT1 392 aaPredicted RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 SAE1Q9UBE0 346 aaPredicted RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 HIF3AQ9Y2N7 669 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ABCA5Q8WWZ7 1642 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ELOVL7A1L3X0 281 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 TVP23AA6NH52 213 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 A8MU76 341 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 OAZ2O95190 189 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms