RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 INTS10Q9NVR2 710 aaKnown RBP19.14■□□□□ 0.65
VPS28-213ENST00000530983 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.14■□□□□ 0.651e-6■■□□□ 14.1
VPS28-213ENST00000530983 MARCH2Q9P0N8 246 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 RIMKLBQ9ULI2 386 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 HEMK1Q9Y5R4 338 aaPredicted RBP19.14■□□□□ 0.65
VPS28-213ENST00000530983 VPS4BO75351 444 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 CYBBP04839 570 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 FMO4P31512 558 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 GSK3BP49841 420 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ANKS6Q68DC2 871 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 KLHL35Q6PF15 583 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 TTC33Q6PID6 262 aaPredicted RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 SPRED1Q7Z699 444 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ZNF786Q8N393 782 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 TRPV3Q8NET8 790 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 DNAJB14Q8TBM8 379 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 FUBP1Q96AE4 644 aaKnown RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 HSPBAP1Q96EW2 488 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 RPL10LQ96L21 214 aaKnown RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 C9orf16Q9BUW7 83 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ALG2Q9H553 416 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ZNF225Q9UK10 706 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ACTL7AQ9Y615 435 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 RNF103-CHMP3A0A140T963 221 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 LCHNA4D1U4 455 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 CDC7O00311 574 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 IGLV3-27P01718 113 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 HNRNPCP07910 306 aaKnown RBP eCLIP19.13■□□□□ 0.65
VPS28-213ENST00000530983 SERPINF2P08697 491 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ZNF140P52738 457 aaPredicted RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 YBEYP58557 167 aaPredicted RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 NFYCQ13952 458 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 NFE2Q16621 373 aaPredicted RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 CYP51A1Q16850 503 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 SPATS1Q496A3 300 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 PAGE3Q5JUK9 113 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 TSPEARQ8WU66 669 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 SOCS4Q8WXH5 440 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 ZNF599Q96NL3 588 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 AIG1Q9NVV5 245 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 TUBA8Q9NY65 449 aaPredicted RBP19.13■□□□□ 0.65
VPS28-213ENST00000530983 TAS2R13Q9NYV9 303 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 IL37Q9NZH6 218 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 SPO11Q9Y5K1 396 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 VWA8A3KMH1 1905 aa19.13■□□□□ 0.65
VPS28-213ENST00000530983 A0A087WXM4 84 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 TCRBV5S2A0A599 114 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 FAM92AA1XBS5 289 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 TRIM64A6NGJ6 449 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 INPP4BO15327 924 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 INPPL1O15357 1258 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 CRCPO75575 148 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 SOAT2O75908 522 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 BAIAP3O94812 1187 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 RASAL1O95294 804 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 GPIP06744 558 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 AGTR2P50052 363 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 C10orf120Q5SQS8 335 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 NADSYN1Q6IA69 706 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 SPATA19Q7Z5L4 167 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 SYVN1Q86TM6 617 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 IFNEQ86WN2 208 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 PTRH1Q86Y79 214 aaKnown RBP19.12■□□□□ 0.65
VPS28-213ENST00000530983 ATAD1Q8NBU5 361 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 GFM2Q969S9 779 aaKnown RBP19.12■□□□□ 0.65
VPS28-213ENST00000530983 NSMCE3Q96MG7 304 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 NLE1Q9NVX2 485 aaPredicted RBP19.12■□□□□ 0.65
VPS28-213ENST00000530983 PTBP2Q9UKA9 531 aaKnown RBP19.12■□□□□ 0.65
VPS28-213ENST00000530983 SLC12A8A0AV02 714 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 NDST3O95803 873 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 RPLP2P05387 115 aaKnown RBP19.12■□□□□ 0.65
VPS28-213ENST00000530983 MAPKAPK2P49137 400 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 MRPL19P49406 292 aaKnown RBP19.12■□□□□ 0.65
VPS28-213ENST00000530983 KCNK10P57789 538 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 XKR7Q5GH72 579 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 ALG1LQ6GMV1 187 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 C17orf99Q6UX52 265 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 ZNF554Q86TJ5 538 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 KIAA2013Q8IYS2 634 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 TNIP2Q8NFZ5 429 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 FBXO32Q969P5 355 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 GALPQ9UBC7 116 aa19.12■□□□□ 0.65
VPS28-213ENST00000530983 A0A0D9SEW6 157 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 NPEPPSL1A6NEC2 478 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 NCF1BA6NI72 391 aaPredicted RBP19.11■□□□□ 0.65
VPS28-213ENST00000530983 NCF1CA8MVU1 366 aaPredicted RBP19.11■□□□□ 0.65
VPS28-213ENST00000530983 CLIC3O95833 236 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 NCF1P14598 390 aaPredicted RBP19.11■□□□□ 0.65
VPS28-213ENST00000530983 NCK1P16333 377 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 UFM1P61960 85 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 LIPEQ05469 1076 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 RAD51Q06609 339 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 DSC1Q08554 894 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 UGT3A1Q6NUS8 523 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 ADAMTS16Q8TE57 1224 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 FBXL20Q96IG2 436 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 GPR21Q99679 349 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 C1QTNF3Q9BXJ4 246 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 SLAMF8Q9P0V8 285 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 PCDHB5Q9Y5E4 795 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms