RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 AMACRQ9UHK6 382 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 RPL26L1Q9UNX3 145 aaKnown RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 TTLL3Q9Y4R7 772 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 C1orf232A0A0U1RR37 186 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 A0A1B0GTH6 734 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 POLR1CO15160 346 aaPredicted RBP23.3■■□□□ 1.32
CPSF1-202ENST00000527827 NUAK1O60285 661 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 HLA-DQB2P05538 268 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 SLC2A4P14672 509 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 CCNCP24863 283 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 STAT5AP42229 794 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 IFI16Q16666 785 aaKnown RBP23.3■■□□□ 1.32
CPSF1-202ENST00000527827 ANO6Q4KMQ2 910 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 FILIP1LQ4L180 1135 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 ATP13A4Q4VNC1 1196 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 ATP1A1-AS1Q5TC04 95 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 KDELC2Q7Z4H8 507 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 LRRN4Q8WUT4 740 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 APOBEC4Q8WW27 367 aaKnown RBP23.3■■□□□ 1.32
CPSF1-202ENST00000527827 NUP85Q9BW27 656 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 EPB41L1Q9H4G0 881 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 CPNE7Q9UBL6 633 aa23.3■■□□□ 1.32
CPSF1-202ENST00000527827 MN1Q10571 1320 aaPredicted RBP23.3■■□□□ 1.32
CPSF1-202ENST00000527827 CLEC18AA5D8T8 446 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 LILRA5A6NI73 299 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 GRID2O43424 1007 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 ANKRD34CP0C6C1 535 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 CA4P22748 312 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 UBE2IP63279 158 aaKnown RBP23.29■■□□□ 1.32
CPSF1-202ENST00000527827 QPCTQ16769 361 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 CRTC2Q53ET0 693 aaPredicted RBP23.29■■□□□ 1.32
CPSF1-202ENST00000527827 CCDC183Q5T5S1 534 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 CLEC18BQ6UXF7 455 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 CLEC18CQ8NCF0 446 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 BPIFA3Q9BQP9 254 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 CARD9Q9H257 536 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 PRDM8Q9NQV8 689 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 PKD2L2Q9NZM6 624 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 OGFRQ9NZT2 677 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 ATXN10Q9UBB4 475 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 ADGRG1Q9Y653 693 aa23.29■■□□□ 1.32
CPSF1-202ENST00000527827 MRPS18BQ9Y676 258 aaKnown RBP23.29■■□□□ 1.32
CPSF1-202ENST00000527827 OR5K4A6NMS3 321 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 C9P02748 559 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 CYP1A2P05177 515 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 MMP2P08253 660 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 F8A1P23610 371 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 CLCNKAP51800 687 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 GFERP55789 205 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 MC1RQ01726 317 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 MAP7Q14244 749 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 ANKRD20A8PQ5CZ79 823 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 C16orf46Q6P387 395 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 CPNE8Q86YQ8 564 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 PLXDC1Q8IUK5 500 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 EID2BQ96D98 161 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 PLEKHG4BQ96PX9 1271 aa23.28■■□□□ 1.32
CPSF1-202ENST00000527827 NAT10Q9H0A0 1025 aaKnown RBP23.28■■□□□ 1.32
CPSF1-202ENST00000527827 RGSL1A5PLK6 1076 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 ZNF8P17098 575 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-202ENST00000527827 TCN2P20062 427 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 SSR1P43307 286 aaKnown RBP23.27■■□□□ 1.32
CPSF1-202ENST00000527827 TDRD12Q587J7 1177 aaKnown RBP23.27■■□□□ 1.32
CPSF1-202ENST00000527827 FIGNQ5HY92 759 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 ZNF648Q5T619 568 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-202ENST00000527827 ESX1Q8N693 406 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 RNF31Q96EP0 1072 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 C9orf72Q96LT7 481 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 MLPHQ9BV36 600 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-202ENST00000527827 ARFGAP3Q9NP61 516 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 HAUS2Q9NVX0 235 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 SCHIP1Q9P0W5 487 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-202ENST00000527827 RPS6KL1Q9Y6S9 549 aa23.27■■□□□ 1.32
CPSF1-202ENST00000527827 ANKRD66B4E2M5 251 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 MYO1FO00160 1098 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 ZNF28P17035 718 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 GBE1Q04446 702 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 SLC10A2Q12908 348 aaPredicted RBP23.26■■□□□ 1.31
CPSF1-202ENST00000527827 HADHQ16836 314 aaKnown RBP23.26■■□□□ 1.31
CPSF1-202ENST00000527827 LACTB2Q53H82 288 aaPredicted RBP23.26■■□□□ 1.31
CPSF1-202ENST00000527827 PHYKPLQ8IUZ5 450 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 AVL9Q8NBF6 648 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 CCHCR1Q8TD31 782 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 GBP4Q96PP9 640 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 ZNF670Q9BS34 389 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 UCK1Q9HA47 277 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 KLC4Q9NSK0 619 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 DTLQ9NZJ0 730 aa23.26■■□□□ 1.31
CPSF1-202ENST00000527827 SMTNL1A8MU46 457 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 XRCC1P18887 633 aaPredicted RBP23.25■■□□□ 1.31
CPSF1-202ENST00000527827 GJC1P36383 396 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 CD86P42081 329 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 FOXM1Q08050 763 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 NR1I3Q14994 352 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 TMEM26Q6ZUK4 368 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 PQLC3Q8N755 202 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 KCTD6Q8NC69 237 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 FAF2Q96CS3 445 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 ULBP3Q9BZM4 244 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 OR2AG1Q9H205 316 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms