RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 EMCNQ9ULC0 261 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 A0A1W2PQF6 199 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 WDR91A4D1P6 747 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 VPS26AO75436 327 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 KLHL2O95198 593 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 PROCP04070 461 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 PYGLP06737 847 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 SLC26A3P40879 764 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 IRX4P78413 519 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 PDAP1Q13442 181 aaKnown RBP20.86■□□□□ 0.93
VPS28-208ENST00000527797 CCINQ13939 588 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 PDK4Q16654 411 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 TSNAXIP1Q2TAA8 658 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 EOGTQ5NDL2 527 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 CTSL3PQ5NE16 218 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 HENMT1Q5T8I9 393 aaKnown RBP20.86■□□□□ 0.93
VPS28-208ENST00000527797 CYP2U1Q7Z449 544 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 ADHFE1Q8IWW8 467 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 RPLP0P6Q8NHW5 317 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 CHMP6Q96FZ7 201 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 ZSCAN5AQ9BUG6 496 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 ABCG8Q9H221 673 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 NMRAL1Q9HBL8 299 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 ZDHHC3Q9NYG2 299 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 AP1G1O43747 822 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 LZTS3O60299 673 aaPredicted RBP20.85■□□□□ 0.93
VPS28-208ENST00000527797 MMP20O60882 483 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 DNAJC6O75061 913 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 DNTTP04053 509 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 LTA4HP09960 611 aaKnown RBP20.85■□□□□ 0.93
VPS28-208ENST00000527797 GM2AP17900 193 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 COL9A1P20849 921 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 CD72P21854 359 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 CD9P21926 228 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 KPNA2P52292 529 aaKnown RBP20.85■□□□□ 0.93
VPS28-208ENST00000527797 SEC24CP53992 1094 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 TIAL1Q01085 375 aaKnown RBP eCLIP20.85■□□□□ 0.93
VPS28-208ENST00000527797 ZNF852Q6ZMS4 543 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 PIM3Q86V86 326 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 TMPRSS6Q8IU80 811 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 CENPLQ8N0S6 344 aaPredicted RBP20.85■□□□□ 0.93
VPS28-208ENST00000527797 NXNL1Q96CM4 212 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 AP2M1Q96CW1 435 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 DTD2Q96FN9 168 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 COPS8Q99627 209 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 BOCQ9BWV1 1114 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 MKRN2Q9H000 416 aaKnown RBP20.85■□□□□ 0.93
VPS28-208ENST00000527797 PRDM6Q9NQX0 595 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 SMOXQ9NWM0 555 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 GNPTGQ9UJJ9 305 aa20.85■□□□□ 0.93
VPS28-208ENST00000527797 NDRG2Q9UN36 371 aaKnown RBP20.85■□□□□ 0.93
VPS28-208ENST00000527797 A0A1W2PP55 124 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 H3BMM5 538 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 TSPAN6O43657 245 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 RNASEH2AO75792 299 aaKnown RBP20.84■□□□□ 0.93
VPS28-208ENST00000527797 WISP3O95389 354 aaPredicted RBP20.84■□□□□ 0.93
VPS28-208ENST00000527797 APOA4P06727 396 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 NEFHP12036 1026 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 C6P13671 934 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 CHRM3P20309 590 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 CSHL1Q14406 222 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 FAM83EQ2M2I3 478 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 AGAP9Q5VTM2 703 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 AGBL4Q5VU57 503 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 PTRHD1Q6GMV3 140 aaKnown RBP20.84■□□□□ 0.93
VPS28-208ENST00000527797 MAFAQ8NHW3 353 aaPredicted RBP20.84■□□□□ 0.93
VPS28-208ENST00000527797 LRRC8CQ8TDW0 803 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 GANCQ8TET4 914 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 KCNJ9Q92806 393 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 SCYL1Q96KG9 808 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 UBXN10Q96LJ8 280 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 SYTL2Q9HCH5 934 aa20.84■□□□□ 0.93
VPS28-208ENST00000527797 SCN8AQ9UQD0 1980 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 TCP11X1B4DZS4 312 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 E5RI56 91 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 BIRC5O15392 142 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 RECQL5O94762 991 aaPredicted RBP20.83■□□□□ 0.93
VPS28-208ENST00000527797 VIMP08670 466 aaKnown RBP20.83■□□□□ 0.93
VPS28-208ENST00000527797 CCDC166P0CW27 439 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 SKIV2L2P42285 1042 aaKnown RBP20.83■□□□□ 0.93
VPS28-208ENST00000527797 NSG1P42857 185 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 CREB5Q02930 508 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 DLG1Q12959 904 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 UGT3A1Q6NUS8 523 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 TMEM207Q6UWW9 146 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 ZNF765Q7L2R6 523 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 FAM136AQ96C01 138 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 NUS1Q96E22 293 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 ZNF317Q96PQ6 595 aaPredicted RBP20.83■□□□□ 0.93
VPS28-208ENST00000527797 GPR21Q99679 349 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 IGSF5Q9NSI5 407 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 MID2Q9UJV3 735 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 SCML1Q9UN30 329 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 MED16Q9Y2X0 877 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 COQ6Q9Y2Z9 468 aa20.83■□□□□ 0.93
VPS28-208ENST00000527797 ZNF106Q9H2Y7 1883 aaKnown RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 NIPSNAP2O75323 286 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 BPGMP07738 259 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 TAC1P20366 129 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 PRKCQQ04759 706 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms