RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MTPNP58546 118 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 MS4A2Q01362 244 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 MAP2K5Q13163 448 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SIM2Q14190 667 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TIGD5Q53EQ6 642 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PAGE2BQ5JRK9 111 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SPANXN2Q5MJ10 180 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF605Q86T29 641 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 RNF180Q86T96 592 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CIR1Q86X95 450 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 DENND1CQ8IV53 801 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 C2CD4AQ8NCU7 369 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 MCOLN3Q8TDD5 553 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 C12orf43Q96C57 262 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 MFSD1Q9H3U5 465 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 EPB41L1Q9H4G0 881 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TFB2MQ9H5Q4 396 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 INTS10Q9NVR2 710 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ACTR3BQ9P1U1 418 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 EIF2B4Q9UI10 523 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 RPS6KA6Q9UK32 745 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SAMHD1Q9Y3Z3 626 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ARL5AQ9Y689 179 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SCN7AQ01118 1682 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZCWPW2A0A1B0GU75 182 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ELOVL7A1L3X0 281 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TTC24A2A3L6 582 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 BEST1O76090 585 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 IFNA14P01570 189 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SERPIND1P05546 499 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CCDC159P0C7I6 412 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 KCNE1P15382 129 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CTPS1P17812 591 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PAX3P23760 479 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 GSK3BP49841 420 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ACSM2AQ08AH3 577 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC10A7Q0GE19 358 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ELAVL2Q12926 359 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 BNIP3Q12983 259 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ACSM2BQ68CK6 577 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TRNP1Q6NT89 227 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZCCHC8Q6NZY4 707 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 GALNT5Q7Z7M9 940 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 GPR180Q86V85 440 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 EGFL6Q8IUX8 553 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CEP97Q8IW35 865 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 OR13C4Q8NGS5 318 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 BRSK1Q8TDC3 778 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 REXO5Q96IC2 774 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 NUSAP1Q9BXS6 441 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TMEM165Q9HC07 324 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 DNMT3LQ9UJW3 386 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SNX6Q9UNH7 406 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PDE10AQ9Y233 779 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TLL2Q9Y6L7 1015 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 A0A1B0GVG6 124 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 SYNDIG1LA6NDD5 238 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 SCAMP3O14828 347 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ALDH1A1P00352 501 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PGK1P00558 417 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 NTRK1P04629 796 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CAPN1P07384 714 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 DBTP11182 482 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 GNPDA1P46926 289 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 YBEYP58557 167 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 HSPA14Q0VDF9 509 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TAF10Q12962 218 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TRAF7Q6Q0C0 670 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 POC5Q8NA72 575 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PPP1R14BQ96C90 147 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TDRD1Q9BXT4 1180 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TM6SF2Q9BZW4 377 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 HIPK3Q9H422 1215 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 LMCD1Q9NZU5 365 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 IFT80Q9P2H3 777 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PADI4Q9UM07 663 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ADAMTS5Q9UNA0 930 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PCDHB9Q9Y5E1 797 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PNMA8CA0A1B0GUJ8 204 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 RFXANKO14593 260 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ATP6V1G1O75348 118 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 LRATO95237 230 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CLIC3O95833 236 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 FTH1P02794 183 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CKMP06732 381 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 OR56A5P0C7T3 313 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 GLDCP23378 1020 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CPOXP36551 454 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 EEFSECP57772 596 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PABPC1LQ4VXU2 614 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ARMCX4Q5H9R4 360 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ARMC4Q5T2S8 1044 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PAQR3Q6TCH7 311 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT2A3Q6UWM9 527 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 AMER2Q8N7J2 671 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ARL10Q8N8L6 244 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ATAD1Q8NBU5 361 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 OR10A6Q8NH74 314 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 RAB2BQ8WUD1 216 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms