RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 LDB1Q86U70 411 aaPredicted RBP10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 CUZD1Q86UP6 607 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 HERC6Q8IVU3 1022 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 SPATA6LQ8N4H0 392 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 PACRGLQ8N7B6 248 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 SLC22A17Q8WUG5 538 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 LZICQ8WZA0 190 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 FEM1CQ96JP0 617 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 CNBD2Q96M20 576 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 SMIM14Q96QK8 99 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 HOPXQ9BPY8 73 aaPredicted RBP10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 TCF25Q9BQ70 676 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 TRIM15Q9C019 465 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 UNKQ9C0B0 810 aaKnown RBP10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 SMG9Q9H0W8 520 aaKnown RBP10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 CACNA2D2Q9NY47 1150 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 CROTQ9UKG9 612 aa10.97□□□□□ -0.65
SH3RF1-203ENST00000508685 TCRBV3S1A0A5B6 114 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 VILLO15195 856 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 NRP2O60462 931 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 RNASEH2AO75792 299 aaKnown RBP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 SRP72O76094 671 aaKnown RBP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 PGM3O95394 542 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 LRG1P02750 347 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 ASLP04424 464 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 BMP8BP34820 402 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 STX1BP61266 288 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 TUBA4AP68366 448 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 CYTH1Q15438 398 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 NADK2Q4G0N4 442 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 RBM20Q5T481 1227 aaKnown RBP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 LILRA6Q6PI73 481 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 Q6ZNB5 142 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 BBS5Q8N3I7 341 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 OR6P1Q8NGX9 317 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 PEX13Q92968 403 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 HDAC10Q969S8 669 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 ZUFSPQ96AP4 578 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 L3HYPDHQ96EM0 354 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 MPP4Q96JB8 637 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 DNAJC1Q96KC8 554 aaKnown RBP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 UBXN10Q96LJ8 280 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 KLHL32Q96NJ5 620 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 TRIB3Q96RU7 358 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 LRRC3Q9BY71 257 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 PRO3102Q9H379 93 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 RETREG1Q9H6L5 497 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 HCFC1R1Q9NWW0 138 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 MARCH4Q9P2E8 410 aaPredicted RBP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 CD300AQ9UGN4 299 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 PACSIN3Q9UKS6 424 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 MTF2Q9Y483 593 aaPredicted RBP10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 TRAF6Q9Y4K3 522 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 INSL6Q9Y581 213 aa10.96□□□□□ -0.65
SH3RF1-203ENST00000508685 TRIOBPQ9H2D6 2365 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 EYSQ5T1H1 3165 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 DOCK6Q96HP0 2047 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 SPTBN5Q9NRC6 3674 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CARNS1A5YM72 827 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 A8MT66 165 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CCL16O15467 120 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 INSIG1O15503 277 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 FGF1P05230 155 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 JUNP05412 331 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 ADH1AP07327 375 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CR2P20023 1033 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 HLA-DPA1P20036 260 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 PRAMEP78395 509 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 NFKB2Q00653 900 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CREMQ03060 361 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 FPGSQ05932 587 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CDH18Q13634 790 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CSHL1Q14406 222 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 MAP7D1Q3KQU3 841 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 AGKQ53H12 422 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 IL23RQ5VWK5 629 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 PLPP4Q5VZY2 271 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 REP15Q6BDI9 236 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CILP2Q8IUL8 1156 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CHERPQ8IWX8 916 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 KREMEN2Q8NCW0 462 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 OR13C4Q8NGS5 318 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 HM13Q8TCT9 377 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 MRPS31Q92665 395 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 NMD3Q96D46 503 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 MOCOSQ96EN8 888 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 PRPF18Q99633 342 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CORO1BQ9BR76 489 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 FEM1AQ9BSK4 669 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 RBM38Q9H0Z9 239 aaKnown RBP10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 ACSS2Q9NR19 701 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 ARMC1Q9NVT9 282 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 TMEM181Q9P2C4 612 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 CIDEBQ9UHD4 219 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 VWA7Q9Y334 891 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 PCDHGC4Q9Y5F7 938 aa10.96□□□□□ -0.66
SH3RF1-203ENST00000508685 E7ENX8 843 aa10.95□□□□□ -0.66
SH3RF1-203ENST00000508685 STX16-NPEPL1H3BU86 382 aa10.95□□□□□ -0.66
SH3RF1-203ENST00000508685 GFRA2O00451 464 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms