RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PPM1DO15297 605 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 BCAT2O15382 392 aaPredicted RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 AP1G1O43747 822 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 TLR5O60602 858 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 USP12O75317 370 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ZNF217O75362 1048 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 IL18RAPO95256 599 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 LDHAP00338 332 aaKnown RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 MT-CO3P00414 261 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 HNRNPCP07910 306 aaKnown RBP eCLIP4.09□□□□□ -1.75
USP54-217ENST00000498213 ELFN1P0C7U0 828 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 GABRG2P18507 467 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 HDCP19113 662 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 GABRR2P28476 465 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 MAGEA11P43364 429 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 LHX1P48742 406 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 TUBP50607 506 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ERVPABLB-1P60509 514 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SNRPFP62306 86 aaKnown RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 NKX6-1P78426 367 aaPredicted RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 TSPY1Q01534 308 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 BFSP1Q12934 665 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 PIN1Q13526 163 aaPredicted RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 TAF12Q16514 161 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 TMEM119Q4V9L6 283 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 EOGTQ5NDL2 527 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SPATA1Q5VX52 437 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 VSTM1Q6UX27 236 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 DNAJB7Q7Z6W7 309 aaPredicted RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 DAAM2Q86T65 1068 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 MON1AQ86VX9 555 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 CMTM8Q8IZV2 173 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 LSMEM2Q8N112 164 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 EID2Q8N6I1 236 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 LRRC52Q8N7C0 313 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 OVCA2Q8WZ82 227 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 MRPS31Q92665 395 aaKnown RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 HPS3Q969F9 1004 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 RFKQ969G6 155 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SGF29Q96ES7 293 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 LRGUKQ96M69 825 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ZNF560Q96MR9 790 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 MMS19Q96T76 1030 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 CGRRF1Q99675 332 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ACBD6Q9BR61 282 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SH2D3AQ9BRG2 576 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SLC29A3Q9BZD2 475 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 UNKQ9C0B0 810 aaKnown RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 CDT1Q9H211 546 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 BHMT2Q9H2M3 363 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ECT2Q9H8V3 914 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ASCL3Q9NQ33 180 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ZNF71Q9NQZ8 489 aaPredicted RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 THSD1Q9NS62 852 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 COMMD8Q9NX08 183 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 TBC1D7Q9P0N9 293 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SH3BP4Q9P0V3 963 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 TBC1D14Q9P2M4 693 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SEL1LQ9UBV2 794 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 LRWD1Q9UFC0 647 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 ZNF180Q9UJW8 692 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SERTAD3Q9UJW9 196 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 EXOC7Q9UPT5 735 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SHOC2Q9UQ13 582 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 STYXL1Q9Y6J8 313 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 SLCO1B1Q9Y6L6 691 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.09□□□□□ -1.75
USP54-217ENST00000498213 AKAP9Q99996 3911 aa4.09□□□□□ -1.76
USP54-217ENST00000498213 SDK2Q58EX2 2172 aa4.09□□□□□ -1.76
USP54-217ENST00000498213 CSMD2Q7Z408 3487 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 CCDC169A6NNP5 214 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PIRO00625 290 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 OGTO15294 1046 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 SLC16A3O15427 465 aaKnown RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 MED24O75448 989 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 NOL4O94818 638 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 NFATC1O95644 943 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PRKCGP05129 697 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PDHA1P08559 390 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 TRIM21P19474 475 aaKnown RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 CCT6AP40227 531 aaKnown RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 TNFRSF4P43489 277 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 BRCC3P46736 316 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 CLCN2P51788 898 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 ZNF131P52739 623 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PROK1P58294 105 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 LILRA4P59901 499 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 ST3GAL1Q11201 340 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 SLC10A2Q12908 348 aaPredicted RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 E2F2Q14209 437 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 ZNF267Q14586 743 aaPredicted RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 TGIF1Q15583 401 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 SRSF7Q16629 238 aaKnown RBP eCLIP4.08□□□□□ -1.76
USP54-217ENST00000498213 KCNT1Q5JUK3 1230 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 RINT1Q6NUQ1 792 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 DSTYKQ6XUX3 929 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 C4orf50Q6ZRC1 276 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 STXBP4Q6ZWJ1 553 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 C1orf186Q6ZWK4 172 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 CDR2LQ86X02 465 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms