RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 A0A087X002 238 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 TEX13CA0A0J9YWL9 993 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 TMEM202A6NGA9 273 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 BCAT2O15382 392 aaPredicted RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 ATP1A3P13637 1013 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 COX7A2P14406 83 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 POLR2CP19387 275 aaPredicted RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 ELF1P32519 619 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 METAP2P50579 478 aaKnown RBP eCLIP3.57□□□□□ -1.84
VPS50-219ENST00000495039 CASP6P55212 293 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 SLC8A3P57103 927 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 TAF11Q15544 211 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 TMEM35AQ53FP2 167 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 ZNF667Q5HYK9 610 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 SERTAD4-AS1Q5TG53 156 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 METTL2BQ6P1Q9 378 aaKnown RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 TMEM81Q6P7N7 255 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 RBMS3Q6XE24 437 aaKnown RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 AMER3Q8N944 861 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 OR52I2Q8NH67 350 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 FCAMRQ8WWV6 532 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 EVI5LQ96CN4 794 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 LINGO1Q96FE5 620 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 ZNF414Q96IQ9 312 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 METTL2AQ96IZ6 378 aaKnown RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 MCRIP2Q9BUT9 160 aaKnown RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 KCNN2Q9H2S1 579 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 PLEKHA4Q9H4M7 779 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 MAGEE1Q9HCI5 957 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 SNTG1Q9NSN8 517 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 KIAA1456Q9P272 454 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 RASAL2Q9UJF2 1139 aa3.57□□□□□ -1.84
VPS50-219ENST00000495039 FBXO9Q9UK97 447 aaPredicted RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 TTC7AQ9ULT0 858 aaPredicted RBP3.57□□□□□ -1.84
VPS50-219ENST00000495039 TAF1P21675 1872 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 J3KRW8 73 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 EPB41L2O43491 1005 aaKnown RBP3.56□□□□□ -1.84
VPS50-219ENST00000495039 DCXO43602 365 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 TACC1O75410 805 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 F9P00740 461 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 GALTP07902 379 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 CD48P09326 243 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 POU1F1P28069 291 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 VEPH1Q14D04 833 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 SLC45A4Q5BKX6 768 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 SGO1Q5FBB7 561 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 TECRLQ5HYJ1 363 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 OR7E24Q6IFN5 339 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 CPLX2Q6PUV4 134 aaKnown RBP3.56□□□□□ -1.84
VPS50-219ENST00000495039 GPAT4Q86UL3 456 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 PCYOX1LQ8NBM8 494 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 NFKBIDQ8NI38 313 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 QRFPRQ96P65 431 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 CABLES2Q9BTV7 478 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 AGXT2Q9BYV1 514 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 PDCL3Q9H2J4 239 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 UNC45AQ9H3U1 944 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 MMP25Q9NPA2 562 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 INTS10Q9NVR2 710 aaKnown RBP3.56□□□□□ -1.84
VPS50-219ENST00000495039 IRAK4Q9NWZ3 460 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 BARHL2Q9NY43 387 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 KCND2Q9NZV8 630 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 MPP6Q9NZW5 540 aa3.56□□□□□ -1.84
VPS50-219ENST00000495039 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.56□□□□□ -1.84
VPS50-219ENST00000495039 PTPRCP08575 1304 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 CTSVO60911 334 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 FAM106CPP0CH98 169 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 GATA1P15976 413 aaPredicted RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 ARL1P40616 181 aaPredicted RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 NEXNQ0ZGT2 675 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 FOXD4Q12950 439 aaPredicted RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 PTP4A2Q12974 167 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 GRIK3Q13003 919 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 TCTN1Q2MV58 587 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 PRICKLE4Q2TBC4 344 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 SLC9B1Q4ZJI4 515 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 ZC2HC1CQ53FD0 456 aaPredicted RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 SLC35F3Q8IY50 421 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 ZCCHC9Q8N567 271 aaKnown RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 DDHD1Q8NEL9 900 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 ARHGEF26Q96DR7 871 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 MOCOSQ96EN8 888 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 SAAL1Q96ER3 474 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 MPP4Q96JB8 637 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 KLHL15Q96M94 604 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 BBS4Q96RK4 519 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 PCYT2Q99447 389 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 LBHD1Q9BQE6 289 aaPredicted RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 HEMGNQ9BXL5 484 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 BICC1Q9H694 974 aaKnown RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 PPP1R3EQ9H7J1 279 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 GPR108Q9NPR9 543 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 C20orf141Q9NUB4 165 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 FAM120CQ9NX05 1096 aaKnown RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 CTNNAL1Q9UBT7 734 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 ZNF69Q9UC07 566 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 CACNG5Q9UF02 275 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 SARDHQ9UL12 918 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 CAMK2AQ9UQM7 478 aa3.55□□□□□ -1.84
VPS50-219ENST00000495039 NAALADL1Q9UQQ1 740 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms