RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PTPRRQ15256 657 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 CT47A1Q5JQC4 288 aaPredicted RBP8.11□□□□□ -1.11
USP39-216ENST00000490193 ARMC12Q5T9G4 340 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 LRRC66Q68CR7 880 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 DCUN1D2Q6PH85 259 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 RFLNAQ6ZTI6 216 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 MARK2Q7KZI7 788 aaKnown RBP8.11□□□□□ -1.11
USP39-216ENST00000490193 SLC9B2Q86UD5 537 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 TRIM74Q86UV6 250 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 TP53INP2Q8IXH6 220 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 MCOLN2Q8IZK6 566 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 BBS5Q8N3I7 341 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 EXD1Q8NHP7 514 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 CPT1CQ8TCG5 803 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 FNIP1Q8TF40 1166 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 SCAMP4Q969E2 229 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 C9orf72Q96LT7 481 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 AGPAT1Q99943 283 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 RMI1Q9H9A7 625 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 MLXIPLQ9NP71 852 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 GOLGA6AQ9NYA3 693 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 TAB2Q9NYJ8 693 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 CWC15Q9P013 229 aaKnown RBP8.11□□□□□ -1.11
USP39-216ENST00000490193 TLK1Q9UKI8 766 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 DNPEPQ9ULA0 475 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 PCYT1BQ9Y5K3 369 aaPredicted RBP8.11□□□□□ -1.11
USP39-216ENST00000490193 A0A0J9YYE9 177 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 C21orf140B9A014 251 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 INPP4BO15327 924 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CREG1O75629 220 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 SORBS2O94875 1100 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 DDAH2O95865 285 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 TRBC1P01850 177 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PDHA1P08559 390 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 FGF5P12034 268 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 ATP1A3P13637 1013 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PSMA2P25787 234 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 GARSP41250 739 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 PPM1FP49593 454 aaPredicted RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 STC1P52823 247 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CDH6P55285 790 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 GFERP55789 205 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 UBE2IP63279 158 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 MAMLD1Q13495 774 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 SEMA5AQ13591 1074 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 ERV3-1Q14264 604 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 SYCP1Q15431 976 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PPP6R3Q5H9R7 873 aaPredicted RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 CDKAL1Q5VV42 579 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PAPD7Q5XG87 772 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 ALG1LQ6GMV1 187 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PLEKHA7Q6IQ23 1121 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 ACAD10Q6JQN1 1059 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PPP1R2P3Q6NXS1 205 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CHST15Q7LFX5 561 aaPredicted RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 NDUFAF2Q8N183 169 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 GALNT6Q8NCL4 622 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 SEC14L1Q92503 715 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 WDR24Q96S15 920 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 AGAP2Q99490 1192 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 TBC1D10AQ9BXI6 508 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 ZNF768Q9H5H4 540 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 PARVAQ9NVD7 372 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 OGFRQ9NZT2 677 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CPNE7Q9UBL6 633 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CNOT8Q9UFF9 292 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 KLHL3Q9UH77 587 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 ZNHIT2Q9UHR6 403 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CD84Q9UIB8 345 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 CNOT6Q9ULM6 557 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 MAP4K5Q9Y4K4 846 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 PCDHGA9Q9Y5G4 932 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 OAS3Q9Y6K5 1087 aaKnown RBP8.1□□□□□ -1.11
USP39-216ENST00000490193 MED13Q9UHV7 2174 aa8.1□□□□□ -1.11
USP39-216ENST00000490193 A0A0U1RQS6 177 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 CDC14CA4D256 554 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 TMEM191CA6NGB0 347 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 TTLL8A6PVC2 850 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PRPSAP2O60256 369 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 NUAK1O60285 661 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 SEMA7AO75326 666 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 LRCH4O75427 683 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 RNF8O76064 485 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 KIAA0754O94854 1291 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 NDUFA10O95299 355 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 MT-ND3P03897 115 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 ATP1A1P05023 1023 aaKnown RBP8.09□□□□□ -1.11
USP39-216ENST00000490193 RNF224P0DH78 156 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 CTPS1P17812 591 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 XRCC1P18887 633 aaPredicted RBP8.09□□□□□ -1.11
USP39-216ENST00000490193 MIPP30301 263 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 MMP13P45452 471 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 MAPK9P45984 424 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 MAXP61244 160 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 FOXM1Q08050 763 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 DNASE1L3Q13609 305 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 BECN1Q14457 450 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 KRT31Q15323 416 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 DPYSL2Q16555 572 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms