RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SERPINA1P01009 418 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CCNYL3P0C7X3 344 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 UROSP10746 265 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 BMP7P18075 431 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 WDR4P57081 412 aaKnown RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 RHAGQ02094 409 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 SPATA22Q8NHS9 363 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CLEC4DQ8WXI8 215 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 HNRNPABQ99729 332 aaKnown RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 DPEP3Q9H4B8 488 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 TBC1D3BA6NDS4 549 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 MYL9P24844 172 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 KIR3DL1P43629 444 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 LDB1Q86U70 411 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 APOLD1Q96LR9 279 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 AARSD1Q9BTE6 412 aaKnown RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 SLC22A2O15244 555 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 PRKAR1AP10644 381 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 CTSKP43235 329 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 CCNHP51946 323 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 PSMD4P55036 377 aaKnown RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 DSC2Q02487 901 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ITGA7Q13683 1181 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 AKAP14Q86UN6 197 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ZBTB2Q8N680 514 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 FAXDC2Q96IV6 333 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TBATAQ96M53 351 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 WBP11Q9Y2W2 641 aaKnown RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 MFHAS1Q9Y4C4 1052 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 IQCMA0A1B0GVH7 501 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 CCDC189A1A4V9 331 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 SLC28A2O43868 658 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 HNF4AP41235 474 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ASPAP45381 313 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 IL23RQ5VWK5 629 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 PAOXQ6QHF9 649 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ARL10Q8N8L6 244 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 SMYD1Q8NB12 490 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 RRAGCQ9HB90 399 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 SGK2Q9HBY8 427 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 PCDHA2Q9Y5H9 948 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 GLYATL1P3A0A0U1RQE8 302 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TULP3O75386 442 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TMEM63AO94886 807 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 RCVRNP35243 200 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 BUD31P41223 144 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 SLC5A3P53794 718 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ADGRE1Q14246 886 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ZDHHC20Q5W0Z9 365 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 FSTL5Q8N475 847 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 HEXDCQ8WVB3 486 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 GMIPQ9P107 970 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 RAI2Q9Y5P3 530 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 LOC110117498-PIK3R3F6TDL0 507 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 FABP3P05413 133 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 CACNG1Q06432 222 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TAF10Q12962 218 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 SIM2Q14190 667 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TARBP2Q15633 366 aaKnown RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ACSBG2Q5FVE4 666 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TSTD2Q5T7W7 516 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 ESRP1Q6NXG1 681 aaKnown RBP16.35■□□□□ 0.21
COL7A1-210ENST00000487017 UTS2BQ765I0 119 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 SPPL2BQ8TCT7 592 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 HPS1Q92902 700 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 CORO1BQ9BR76 489 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 IGSF9Q9P2J2 1179 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 CNTN6Q9UQ52 1028 aa16.35■□□□□ 0.21
COL7A1-210ENST00000487017 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 VNN1O95497 513 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 MTTPP55157 894 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 DNAJC11Q9NVH1 559 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 IRGMA1A4Y4 181 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 C1QTNF3-AMACRE9PGA6 284 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 SSNA1O43805 119 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 ITPKAP23677 461 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 YBEYP58557 167 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 TRMT10BQ6PF06 316 aaKnown RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 CXXC5Q7LFL8 322 aaKnown RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 OR6K2Q8NGY2 324 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 FAR1Q8WVX9 515 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 FAM210AQ96ND0 272 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 NTPCRQ9BSD7 190 aaKnown RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 IPPKQ9H8X2 491 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 SMARCB1Q12824 385 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 CPNE8Q86YQ8 564 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 LRRC17Q8N6Y2 441 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 NAT8LQ8N9F0 302 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 HM13Q8TCT9 377 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 TRPM4Q8TD43 1214 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 AZIN2Q96A70 460 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 POLE3Q9NRF9 147 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 RASSF1Q9NS23 344 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 KIAA1522Q9P206 1035 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 ADAMTS3O15072 1205 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 ERAL1O75616 437 aaKnown RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 HIST1H2ABP04908 130 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 PRKD1Q15139 912 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-210ENST00000487017 HIST3H2AQ7L7L0 130 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 SATL1Q86VE3 508 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms