RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 TCN2P20062 427 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 GARSP41250 739 aaKnown RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 STAT5AP42229 794 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 SPINT3P49223 89 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 EPHB1P54762 984 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 GALNT2Q10471 571 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 SEPT6Q14141 434 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 SMTNL2Q2TAL5 461 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 LACTB2Q53H82 288 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 TCTN3Q6NUS6 607 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 FAM26EQ8N5C1 309 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 ARRDC2Q8TBH0 407 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 STARD8Q92502 1023 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 ZNF653Q96CK0 615 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 PSMG3-AS1Q96PY0 264 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 SMIM14Q96QK8 99 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 CTRCQ99895 268 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 TDRD1Q9BXT4 1180 aaKnown RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 CARD9Q9H257 536 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 RTN4Q9NQC3 1192 aaKnown RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 ZNF71Q9NQZ8 489 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 HAUS2Q9NVX0 235 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 CPNE7Q9UBL6 633 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 KCNMB2Q9Y691 235 aa12.88□□□□□ -0.35
HDAC6-227ENST00000485102 OAS3Q9Y6K5 1087 aaKnown RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 SPENQ96T58 3664 aaKnown RBP12.88□□□□□ -0.35
HDAC6-227ENST00000485102 INPP4BO15327 924 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 CLDN7O95471 211 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 ATP1A1P05023 1023 aaKnown RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 TPM1P09493 284 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 PRKAR1AP10644 381 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 XRCC1P18887 633 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 CA4P22748 312 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 CCNCP24863 283 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 UBASH3AP57075 661 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 UBE2IP63279 158 aaKnown RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 SLC25A11Q02978 314 aaKnown RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 KLRB1Q12918 225 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 NFATC2Q13469 925 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 IL11RAQ14626 422 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 PAFAH1B3Q15102 231 aaKnown RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 ASIC2Q16515 512 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 DEFB109BQ30KR1 87 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 SNAP47Q5SQN1 464 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 TXNRD3NBQ6F5E7 133 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 TIGD7Q6NT04 549 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 CHST15Q7LFX5 561 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-227ENST00000485102 KDELC2Q7Z4H8 507 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 LUZP1Q86V48 1076 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 UNC5BQ8IZJ1 945 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 HSPH1Q92598 858 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 MIB2Q96AX9 1013 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 C9orf72Q96LT7 481 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 ZMYND15Q9H091 742 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 FAM83DQ9H4H8 585 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 CHKBQ9Y259 395 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 MAN2B2Q9Y2E5 1009 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 ADGRG1Q9Y653 693 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 RPS6KL1Q9Y6S9 549 aa12.87□□□□□ -0.35
HDAC6-227ENST00000485102 PRR19A6NJB7 356 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 FADS2P1A8MWK0 482 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 ANKRD66B4E2M5 251 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 GRID2O43424 1007 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 F8A1P23610 371 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 NOP2P46087 812 aaKnown RBP12.86□□□□□ -0.35
HDAC6-227ENST00000485102 ARSEP51690 589 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 ITKQ08881 620 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 KLHL30Q0D2K2 578 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 IFI16Q16666 785 aaKnown RBP12.86□□□□□ -0.35
HDAC6-227ENST00000485102 ANKRD20A8PQ5CZ79 823 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 E4F1Q66K89 784 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-227ENST00000485102 LURAP1LQ8IV03 231 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 PLEKHG4BQ96PX9 1271 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 RBM22Q9NW64 420 aaKnown RBP eCLIP12.86□□□□□ -0.35
HDAC6-227ENST00000485102 IP6K2Q9UHH9 426 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 KCNK6Q9Y257 313 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 PRKAB1Q9Y478 270 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 PCDHB3Q9Y5E6 796 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 TEX15Q9BXT5 2789 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 SEC16AO15027 2179 aa12.86□□□□□ -0.35
HDAC6-227ENST00000485102 A0A1B0GTH6 734 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 CHUKO15111 745 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 ACP5P13686 325 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 FANCCQ00597 558 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 DSC2Q02487 901 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 TRIM14Q14142 442 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 CCDC122Q5T0U0 273 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 PDPK2PQ6A1A2 396 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 SARM1Q6SZW1 724 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 TMEM26Q6ZUK4 368 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 PHYKPLQ8IUZ5 450 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 CCHCR1Q8TD31 782 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 MLPHQ9BV36 600 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-227ENST00000485102 TBC1D10AQ9BXI6 508 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 ZNF768Q9H5H4 540 aaKnown RBP12.85□□□□□ -0.35
HDAC6-227ENST00000485102 PCDH9Q9HC56 1237 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 TRIM39Q9HCM9 518 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 PKD2L2Q9NZM6 624 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 OGFRQ9NZT2 677 aa12.85□□□□□ -0.35
HDAC6-227ENST00000485102 SEMA5BQ9P283 1151 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms