RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TAF1P21675 1872 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 ADGBQ8N7X0 1667 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 KIF14Q15058 1648 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 CAMSAP2Q08AD1 1489 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 BRD4O60885 1362 aaPredicted RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 LILRA5A6NI73 299 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 BUB3O43684 328 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 JRKO75564 520 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 F7P08709 466 aaPredicted RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 LAMP2P13473 410 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 TNFAIP3P21580 790 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 UBA1P22314 1058 aaKnown RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 NLRP5P59047 1200 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 PDE1BQ01064 536 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 TROAPQ12815 778 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 ZRSR1Q15695 479 aaKnown RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 ADIPOQQ15848 244 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 DECR1Q16698 335 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 ZNF718Q3SXZ3 478 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 DCST1Q5T197 706 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 TAF3Q5VWG9 929 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 ZNF280DQ6N043 979 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 NCEH1Q6PIU2 408 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 BRAT1Q6PJG6 821 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 GFRALQ6UXV0 394 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 RNF113BQ8IZP6 322 aaKnown RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 POC1AQ8NBT0 407 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 SPATA20Q8TB22 786 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 SECTM1Q8WVN6 248 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 APBB2Q92870 758 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 TAAR8Q969N4 342 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 WDFY2Q96P53 400 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 MTERF1Q99551 399 aaKnown RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 SEPT5Q99719 369 aaPredicted RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 CMKLR1Q99788 373 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 MUC13Q9H3R2 512 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 SEBOXQ9HB31 216 aaPredicted RBP5.84□□□□□ -1.47
USP40-213ENST00000483216 CROCC2H7BZ55 1655 aa5.84□□□□□ -1.47
USP40-213ENST00000483216 GPATCH8Q9UKJ3 1502 aaKnown RBP5.84□□□□□ -1.48
USP40-213ENST00000483216 NCOA1Q15788 1441 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 LIPT2A6NK58 231 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 IFITM10A6NMD0 228 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 HCRTR2O43614 444 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 NDUFS3O75489 264 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 CAMTA2O94983 1202 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 NFKBIAP25963 317 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 CORO1AP31146 461 aaKnown RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 USP8P40818 1118 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 DLX5P56178 289 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 RELQ04864 619 aaPredicted RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 KRT32Q14532 448 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 HAUS3Q68CZ6 603 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 TTI2Q6NXR4 508 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 SEPT14Q6ZU15 432 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 RSRC2Q7L4I2 434 aaKnown RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 TMEM219Q86XT9 240 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 NRROSQ86YC3 692 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 ODF3L1Q8IXM7 274 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 RNF168Q8IYW5 571 aaPredicted RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 SRBD1Q8N5C6 995 aaKnown RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 DUSP19Q8WTR2 217 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 SLC20A1Q8WUM9 679 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 RHBDF1Q96CC6 855 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 CDCA5Q96FF9 252 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 TTC14Q96N46 770 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 SMC4Q9NTJ3 1288 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 UBA2Q9UBT2 640 aaPredicted RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 PADI1Q9ULC6 663 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 KDM5BQ9UGL1 1544 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 UHRF1BP1LA0JNW5 1464 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 DENND4BO75064 1496 aaPredicted RBP5.83□□□□□ -1.48
USP40-213ENST00000483216 ADGRL2O95490 1459 aa5.83□□□□□ -1.48
USP40-213ENST00000483216 CCDC7Q96M83 1385 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 MAPK8IP3Q9UPT6 1336 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 M0QZ24 198 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 SCAMP1O15126 338 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 USO1O60763 962 aaKnown RBP5.82□□□□□ -1.48
USP40-213ENST00000483216 DAB1O75553 588 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 RNASEH2AO75792 299 aaKnown RBP5.82□□□□□ -1.48
USP40-213ENST00000483216 SCGB1D1O95968 90 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 HLA-DOBP13765 273 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 DGKAP23743 735 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 CLCN3P51790 818 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 TAS2R38P59533 333 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 CALD1Q05682 793 aaKnown RBP5.82□□□□□ -1.48
USP40-213ENST00000483216 MED22Q15528 200 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 SYT16Q17RD7 645 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 MAATS1Q7Z4T9 603 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 NAP1L5Q96NT1 182 aaPredicted RBP5.82□□□□□ -1.48
USP40-213ENST00000483216 MAGIXQ9H6Y5 334 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 PLEKHA5Q9HAU0 1116 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 KLHL1Q9NR64 748 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 CFDP1Q9UEE9 299 aaPredicted RBP5.82□□□□□ -1.48
USP40-213ENST00000483216 OR14J1Q9UGF5 321 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 ICAM5Q9UMF0 924 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 PCDHAC2Q9Y5I4 1007 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 ATP10BO94823 1461 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 ABCC10Q5T3U5 1492 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 SHANK2Q9UPX8 1470 aa5.82□□□□□ -1.48
USP40-213ENST00000483216 CDC42BPAQ5VT25 1732 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms