RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 FRG2BQ96QU4 278 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 IWS1Q96ST2 819 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 WDR77Q9BQA1 342 aaPredicted RBP4.85□□□□□ -1.63
VPS50-214ENST00000477935 CADM1Q9BY67 442 aaKnown RBP4.85□□□□□ -1.63
VPS50-214ENST00000477935 B3GNT4Q9C0J1 378 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 CHODLQ9H9P2 273 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 ENTPD7Q9NQZ7 604 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 ZDHHC7Q9NXF8 308 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 UPB1Q9UBR1 384 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 CCPG1Q9ULG6 757 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 SLC4A4Q9Y6R1 1079 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 MYH1P12882 1939 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 FANCMQ8IYD8 2048 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 IGSF10Q6WRI0 2623 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 DMXL2Q8TDJ6 3036 aa4.85□□□□□ -1.63
VPS50-214ENST00000477935 PARP14Q460N5 1801 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 FOCADQ5VW36 1801 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 RPS10-NUDT3A0A1W2PQS6 291 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 KANSL1LA0AUZ9 987 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 TMEM247A6NEH6 219 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 HIDE1A8MVS5 230 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 EIF3JO75822 258 aaKnown RBP4.84□□□□□ -1.63
VPS50-214ENST00000477935 GLULP15104 373 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 PRKCHP24723 683 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 CALML3P27482 149 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 SLC1A4P43007 532 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 RFX2P48378 723 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 MVDP53602 400 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 PGGT1BP53609 377 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 NANOS2P60321 138 aaKnown RBP4.84□□□□□ -1.63
VPS50-214ENST00000477935 RPS6P62753 249 aaKnown RBP4.84□□□□□ -1.63
VPS50-214ENST00000477935 PKP1Q13835 747 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 SMC1AQ14683 1233 aaKnown RBP4.84□□□□□ -1.63
VPS50-214ENST00000477935 PTPN14Q15678 1187 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 STXBP2Q15833 593 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 GRAMD1BQ3KR37 738 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 PLPP4Q5VZY2 271 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 AADACL2Q6P093 401 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 CYP26C1Q6V0L0 522 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 C15orf39Q6ZRI6 1047 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 SLC16A12Q6ZSM3 486 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 BRSK2Q8IWQ3 736 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 ZNF444Q8N0Y2 327 aaPredicted RBP4.84□□□□□ -1.63
VPS50-214ENST00000477935 NKAPQ8N5F7 415 aaKnown RBP4.84□□□□□ -1.63
VPS50-214ENST00000477935 ENGASEQ8NFI3 743 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 FAR1Q8WVX9 515 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 IFT27Q9BW83 186 aa4.84□□□□□ -1.63
VPS50-214ENST00000477935 ASXL3Q9C0F0 2248 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 A0A0A0MQY5 61 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 IGKV6D-41A0A0C4DH26 115 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 C17orf100A8MU93 164 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 B9A039 149 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 TMCC1O94876 653 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 METTL18O95568 372 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 DDAH2O95865 285 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 CHRNA1P02708 482 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 TGFB3P10600 412 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 UNGP13051 313 aaPredicted RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 CHRNB2P17787 502 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 CDC25AP30304 524 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 RPS9P46781 194 aaKnown RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 RARSP54136 660 aaKnown RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 TMPRSS3P57727 454 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 ACTR2P61160 394 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 LPIN1Q14693 890 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 TAF5Q15542 800 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 LETM2Q2VYF4 491 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 RARS2Q5T160 578 aaKnown RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 SEPT14Q6ZU15 432 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 CAMK1DQ8IU85 385 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 FTSJ3Q8IY81 847 aaKnown RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 SCAIQ8N9R8 606 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 B4GALNT2Q8NHY0 566 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 GABPB2Q8TAK5 448 aaPredicted RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 URB1-AS1Q96HZ7 61 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 LYZL4Q96KX0 146 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 MARK4Q96L34 752 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 C16orf70Q9BSU1 422 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 POLDIP3Q9BY77 421 aaKnown RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 PLAC1Q9HBJ0 212 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 EPS15L1Q9UBC2 864 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 PLEKHB1Q9UF11 243 aaPredicted RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 ISY1Q9ULR0 285 aaKnown RBP4.83□□□□□ -1.64
VPS50-214ENST00000477935 OSGIN2Q9Y236 505 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 DERAQ9Y315 318 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 RAP2CQ9Y3L5 183 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 INSL5Q9Y5Q6 135 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 ITPR1Q14643 2758 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 WDFY3Q8IZQ1 3526 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 NLRC5Q86WI3 1866 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 PTPN13Q12923 2485 aa4.83□□□□□ -1.64
VPS50-214ENST00000477935 LOC400499M0QZD8 3231 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 NRCAMQ92823 1304 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 ZNF532Q9HCE3 1301 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 IGKV2D-30A0A075B6S6 120 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 STX16-NPEPL1H3BU86 382 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 STX16O14662 325 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 IRAK2O43187 625 aa4.82□□□□□ -1.64
VPS50-214ENST00000477935 TPD52L2O43399 206 aaKnown RBP4.82□□□□□ -1.64
VPS50-214ENST00000477935 SMAD6O43541 496 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms