RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZFXP17010 805 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 MPSTP25325 297 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 CDKN2BP42772 138 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 DCDC1P59894 354 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 TBX2Q13207 712 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 TRA2AQ13595 282 aaKnown RBP eCLIP18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 PRKD1Q15139 912 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 SLC14A2Q15849 920 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 NT5DC3Q86UY8 548 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 RFX6Q8HWS3 928 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 SPATA22Q8NHS9 363 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 MAK16Q9BXY0 300 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 ARFGAP3Q9NP61 516 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 ATXN10Q9UBB4 475 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 INTUQ9ULD6 942 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 SHOC2Q9UQ13 582 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNF711Q9Y462 761 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 NUAK1O60285 661 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 MT-CYBP00156 380 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNF8P17098 575 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 WT1P19544 449 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 COMTP21964 271 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 CD82P27701 267 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 SLC1A1P43005 524 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 CDK18Q07002 472 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 PCSK7Q16549 785 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNF569Q5MCW4 686 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNF648Q5T619 568 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 ALS2CLQ60I27 953 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 IYDQ6PHW0 289 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 TMC3Q7Z5M5 1100 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 CNGA4Q8IV77 575 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 SGF29Q96ES7 293 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 DPYSL5Q9BPU6 564 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 SPATA16Q9BXB7 569 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 CARD9Q9H257 536 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 MAGEE1Q9HCI5 957 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 SARS2Q9NP81 518 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 DDX56Q9NY93 547 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 PDP2Q9P2J9 529 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 SAE1Q9UBE0 346 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 PCDHGA4Q9Y5G9 962 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 PCDHGA3Q9Y5H0 932 aa18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 SPENQ96T58 3664 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-206ENST00000473405 GRID2O43424 1007 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 DUX1O43812 170 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC4A1P02730 911 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 TNNT1P13805 278 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 PECAM1P16284 738 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 PTPN3P26045 913 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 HHEXQ03014 270 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 ADCY2Q08462 1091 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 TEX44Q53QW1 395 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 TMEM71Q6P5X7 295 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 ZNF605Q86T29 641 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 AGBL5Q8NDL9 886 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 TAAR9Q96RI9 348 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC38A3Q99624 504 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 HERPUD2Q9BSE4 406 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 ZSCAN5AQ9BUG6 496 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 OR2AG1Q9H205 316 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 GOLPH3Q9H4A6 298 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 GLOD4Q9HC38 313 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 SPO11Q9Y5K1 396 aa18.58■□□□□ 0.56
CCDC88B-206ENST00000473405 A0A0A6YYK5 440 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 AKR1B15C9JRZ8 316 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 STMND1H3BQB6 276 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 AURKAO14965 403 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 PSTPIP1O43586 416 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 SPOPO43791 374 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 F3P13726 295 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 CD68P34810 354 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 HADHBP55084 474 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 WASHC5Q12768 1159 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 NFATC2Q13469 925 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 MANEAQ5SRI9 462 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 TMEM164Q5U3C3 297 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 WDR74Q6RFH5 385 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 TRAM1L1Q8N609 369 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 BMPERQ8N8U9 685 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 OR10G6Q8NH81 332 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 ART4Q93070 314 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 GLYATL1Q969I3 302 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 MED8Q96G25 268 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 TEKT5Q96M29 485 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 OCIAD1Q9NX40 245 aa18.57■□□□□ 0.56
CCDC88B-206ENST00000473405 CHUKO15111 745 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 SNX2O60749 519 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 PMPCBO75439 489 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC25A14O95258 325 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 NDST3O95803 873 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 BPIP17213 487 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 CSTF2P33240 577 aaKnown RBP eCLIP18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 NR2C2P49116 596 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 LLGL1Q15334 1064 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 LINC00303Q3SY05 128 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 ODF2Q5BJF6 829 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 PDPK2PQ6A1A2 396 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 ADGRG6Q86SQ4 1221 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 PHYKPLQ8IUZ5 450 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms