RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CCDC59Q9P031 241 aaKnown RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZDHHC2Q9UIJ5 367 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 MKLN1Q9UL63 735 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FZD10Q9ULW2 581 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SAGE2PA6NJ88 616 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF839A8K0R7 811 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 KPNA4O00629 521 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SHOXO15266 292 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 VPS4BO75351 444 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 UGT2B17O75795 530 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CHRNGP07510 517 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PLA2G16P53816 162 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 UGT2B15P54855 530 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM198Q66K66 360 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 C16orf87Q6PH81 154 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 METTL7BQ6UX53 244 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CATSPERGQ6ZRH7 1159 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CPNE9Q8IYJ1 553 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 HEPHQ9BQS7 1158 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF302Q9NR11 478 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 KLHL42Q9P2K6 505 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SEPT3Q9UH03 358 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 IPPQ9Y573 584 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 FADS2P1A8MWK0 482 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ARPC2O15144 300 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 IPO13O94829 963 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 EPHX2P34913 555 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 RPS5P46782 204 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SULT1E1P49888 294 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ARHGDIAP52565 204 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GRAMD1BQ3KR37 738 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ADPRMQ3LIE5 342 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 C2CD6Q53TS8 623 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PPM1LQ5SGD2 360 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZBTB49Q6ZSB9 765 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZCCHC23Q6ZST2 131 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CHST13Q8NET6 341 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 OTULINQ96BN8 352 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GABARAPL3Q9BY60 117 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 JPH1Q9HDC5 661 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 NOX1Q9Y5S8 564 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PLXNA1Q9UIW2 1896 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 H7C0S8 307 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MRASO14807 208 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SEC24DO94855 1032 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 AHSGP02765 367 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SNRPB2P08579 225 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 BMP4P12644 408 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PTBP1P26599 531 aaKnown RBP eCLIP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 TNFAIP2Q03169 654 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GRM3Q14832 879 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SEZ6Q53EL9 994 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SLC2A7Q6PXP3 512 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 XKR5Q6UX68 686 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 THAP5Q7Z6K1 395 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SVOPLQ8N434 492 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 BHLHE22Q8NFJ8 381 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MSLNLQ96KJ4 702 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SAMD11Q96NU1 681 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZBTB12Q9Y330 459 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GOLGA8RI6L899 631 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 RBP1P09455 135 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 NAGAP17050 411 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 UBA1P22314 1058 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MPSTP25325 297 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 TYK2P29597 1187 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SDC4P31431 198 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 NOS2P35228 1153 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CDH6P55285 790 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 YBX1P67809 324 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GBX1Q14549 363 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF846Q147U1 533 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SULT1C3Q6IMI6 304 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 DHFR2Q86XF0 187 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 THEM5Q8N1Q8 247 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PROKR1Q8TCW9 393 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 RASSF5Q8WWW0 418 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZFYVE19Q96K21 471 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF70Q9UC06 446 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MAGEL2Q9UJ55 1249 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ASB1Q9Y576 335 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 IGLV3-10A0A075B6K4 115 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GFRA2O00451 464 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 UBFD1O14562 309 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CHRNA1P02708 482 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 C1SP09871 688 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MSL3P1P0C860 447 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CDH1P12830 882 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CLCN5P51795 746 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 TRIM32Q13049 653 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 VEPH1Q14D04 833 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SIGIRRQ6IA17 410 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 SWSAP1Q6NVH7 229 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PKN3Q6P5Z2 889 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CD200R1LQ6Q8B3 271 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CMC1Q7Z7K0 106 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 LYSMD2Q8IV50 215 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 EMC1Q8N766 993 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ARRDC2Q8TBH0 407 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 LRTOMTQ8WZ04 291 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms