RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 BUB1O43683 1085 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 STX10O60499 249 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ZG16O60844 167 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 HSF2BPO75031 334 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 CREG1O75629 220 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 KIAA0754O94854 1291 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 GLI1P08151 1106 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 SNRPB2P08579 225 aaKnown RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 PNMA6AP0CW24 399 aaPredicted RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 KRT5P13647 590 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 DNAJA1P31689 397 aaKnown RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 MMP12P39900 470 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ADCY8P40145 1251 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 GFERP55789 205 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 MC1RQ01726 317 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 DEUP1Q05D60 604 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 FOXM1Q08050 763 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 DNASE1L3Q13609 305 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 IL10RAQ13651 578 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 LAMB3Q13751 1172 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 EFHC1Q5JVL4 640 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 MANEALQ5VSG8 457 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 SLC6A19Q695T7 634 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 LRRC31Q6UY01 552 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 CEACAM20Q6UY09 585 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 BNIPLQ7Z465 357 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 TRIM74Q86UV6 250 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 NLRP14Q86W24 1093 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 FAM131BQ86XD5 332 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 FDCSPQ8NFU4 85 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 FBXO27Q8NI29 283 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 SLC37A2Q8TED4 501 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 NCSTNQ92542 709 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 INPP5DQ92835 1189 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 NT5C3BQ969T7 300 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ARHGEF26Q96DR7 871 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 C1orf74Q96LT6 269 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 C5orf34Q96MH7 638 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ZNF396Q96N95 335 aaPredicted RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 TEFMQ96QE5 360 aaKnown RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 EFHD1Q9BUP0 239 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 NUDT9Q9BW91 350 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 TBC1D10AQ9BXI6 508 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 FRMD8Q9BZ67 464 aaPredicted RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ZYG11BQ9C0D3 744 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 INTS2Q9H0H0 1204 aaKnown RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 GOLPH3LQ9H4A5 285 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 UBE2TQ9NPD8 197 aaPredicted RBP5.25□□□□□ -1.57
PTPN4-209ENST00000469511 ASNSD1Q9NWL6 643 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 OGFRQ9NZT2 677 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 DKK3Q9UBP4 350 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 HPSEQ9Y251 543 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 SLC5A6Q9Y289 635 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 EFR3BQ9Y2G0 817 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 TMEM98Q9Y2Y6 226 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 CACNA1CQ13936 2221 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 FBN3Q75N90 2809 aa5.25□□□□□ -1.57
PTPN4-209ENST00000469511 RTTNQ86VV8 2226 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 PRRC2AP48634 2157 aaKnown RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 TSPAN11A1L157 253 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 A6NCN8 305 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ZSCAN5CA6NGD5 496 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 A6NL46 340 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 FAM229AH3BQW9 127 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 POLR1CO15160 346 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 HNRNPRO43390 633 aaKnown RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 KDELR3O43731 214 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 KIF1CO43896 1103 aaKnown RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 NFKBIAP25963 317 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 CA5AP35218 305 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ACTR1BP42025 376 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 STAT1P42224 750 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 MAPK9P45984 424 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 GPR3P46089 330 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 LEPRP48357 1165 aaKnown RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 PPM1FP49593 454 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 SEPHS1P49903 392 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 NDUFA8P51970 172 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 PGDP52209 483 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 COPB1P53618 953 aaKnown RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ACTR1AP61163 376 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 RHOAP61586 193 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 NFATC2Q13469 925 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 RAPSNQ13702 412 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 POLD3Q15054 466 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 TESK1Q15569 626 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 CRB2Q5IJ48 1285 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 BRMS1LQ5PSV4 323 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ISM2Q6H9L7 571 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 LCN10Q6JVE6 187 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 PNCKQ6P2M8 343 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 LRFN4Q6PJG9 635 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 DOK6Q6PKX4 331 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 C6orf15Q6UXA7 325 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 CERS6Q6ZMG9 384 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ZNF783Q6ZMS7 281 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 C11orf57Q6ZUT1 292 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 SLC26A9Q7LBE3 791 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms