RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TCRBV3S1A0A5B6 114 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 NME4O00746 187 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 STX7O15400 261 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 AP1G1O43747 822 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 AHCYL1O43865 530 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 CRCPO75575 148 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PYGLP06737 847 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 RPS17P08708 135 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PSMA3P25788 255 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 HK3P52790 923 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PLD1Q13393 1074 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 CAPRIN1Q14444 709 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 CHST9Q7L1S5 443 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 AMIGO2Q86SJ2 522 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 SYVN1Q86TM6 617 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 DCBLD1Q8N8Z6 715 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 BHMTQ93088 406 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 TOP1MTQ969P6 601 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ROPN1LQ96C74 230 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 GPATCH1Q9BRR8 931 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 CENPKQ9BS16 269 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ADGRE3Q9BY15 652 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 Q9H521 79 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 COQ10BQ9H8M1 238 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 SDR39U1Q9NRG7 319 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 APPL1Q9UKG1 709 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 SNX13Q9Y5W8 968 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 C7orf72A4D263 438 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ZNF839A8K0R7 811 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SYCE1LA8MT33 242 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 KIF3CO14782 793 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ANGPT2O15123 496 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 HOXA2O43364 376 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 VPS26AO75436 327 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SMIM18P0DKX4 95 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 BMP1P13497 986 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 GRIA3P42263 894 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TTPAP49638 278 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 APLP1P51693 650 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CCL23P55773 120 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TWF1Q12792 350 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 RPS6KA2Q15349 733 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CNPY1Q3B7I2 92 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 C11orf91Q3C1V1 193 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 MAP7D1Q3KQU3 841 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 KIAA1841Q6NSI8 718 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SLC30A9Q6PML9 568 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TAS2R42Q7RTR8 314 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SATL1Q86VE3 508 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 DHFR2Q86XF0 187 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CPNE9Q8IYJ1 553 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 LRRC43Q8N309 656 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CARNMT1Q8N4J0 409 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TTC30BQ8N4P2 665 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 NKAPQ8N5F7 415 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TTC16Q8NEE8 873 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CD200R1Q8TD46 325 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 PXYLP1Q8TE99 480 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 OVCA2Q8WZ82 227 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 EID2BQ96D98 161 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 LINGO1Q96FE5 620 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TEX37Q96LM6 180 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ACOX2Q99424 681 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 HGH1Q9BTY7 390 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SPATA16Q9BXB7 569 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 KLF16Q9BXK1 252 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 RETREG1Q9H6L5 497 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CWH43Q9H720 699 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TRMT6Q9UJA5 497 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TSR3Q9UJK0 312 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 PCTPQ9UKL6 214 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 FCF1Q9Y324 198 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ANAPC1Q9H1A4 1944 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 BBIP1A8MTZ0 92 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 H0Y626 953 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 FXYD1O00168 92 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 KLK8O60259 260 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 EFEMP2O95967 443 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 MYCP01106 439 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CTPS1P17812 591 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ATP6V1B2P21281 511 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SLC7A1P30825 629 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 IL2P60568 153 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 MYBPC1Q00872 1141 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 NOGQ13253 232 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 TAF12Q16514 161 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 RBBP7Q16576 425 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 MTX3Q5HYI7 312 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ATXN7L2Q5T6C5 722 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 HMBOX1Q6NT76 420 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 IYDQ6PHW0 289 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 NCEH1Q6PIU2 408 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SLC15A3Q8IY34 581 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 ZNF461Q8TAF7 563 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 PIP4K2CQ8TBX8 421 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CANT1Q8WVQ1 401 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 CCDC97Q96F63 343 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 HHIPL1Q96JK4 782 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SLC22A12Q96S37 553 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms