RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	PIGH	Q14442	188 aa	Predicted RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	QPCT	Q16769	361 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	ATP13A4	Q4VNC1	1196 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	LYSMD3	Q7Z3D4	306 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	LRRN4	Q8WUT4	740 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	APOBEC4	Q8WW27	367 aa	Known RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	FAF2	Q96CS3	445 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	AHCYL2	Q96HN2	611 aa	Known RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	PLEKHG4B	Q96PX9	1271 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	PSMG3-AS1	Q96PY0	264 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	HERPUD2	Q9BSE4	406 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	THAP2	Q9H0W7	228 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	CARD9	Q9H257	536 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	RMI1	Q9H9A7	625 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	UCK1	Q9HA47	277 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	PRDM8	Q9NQV8	689 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	DTL	Q9NZJ0	730 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	ATXN10	Q9UBB4	475 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	CPNE7	Q9UBL6	633 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	AMACR	Q9UHK6	382 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	ZNHIT2	Q9UHR6	403 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	DNPEP	Q9ULA0	475 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	NENF	Q9UMX5	172 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	RPL26L1	Q9UNX3	145 aa	Known RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	PLAA	Q9Y263	795 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	MAN2B2	Q9Y2E5	1009 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	KCNMB2	Q9Y691	235 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	SLC30A1	Q9Y6M5	507 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	KIR2DS5	A0A0G2JLQ3	304 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815		A0A0G2JNG1	304 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	KIR2DS3	K7RE56	304 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	CHUK	O15111	745 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	MBD3	O95983	291 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	CYP1A2	P05177	515 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	GP1BB	P13224	206 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	BRAF	P15056	766 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF8	P17098	575 aa	Predicted RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	CCNC	P24863	283 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	GBE1	Q04446	702 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	KLHL30	Q0D2K2	578 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	SLC10A2	Q12908	348 aa	Predicted RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	KIR2DS5	Q14953	304 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	DEFB109B	Q30KR1	87 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	FAM182A	Q5T1J6	154 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF648	Q5T619	568 aa	Predicted RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	SASS6	Q6UVJ0	657 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	SLC9B2	Q86UD5	537 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	PQLC3	Q8N755	202 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	CNTD1	Q8N815	330 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	LPCAT1	Q8NF37	534 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	NSMCE1	Q8WV22	266 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	KIAA1143	Q96AT1	154 aa	Predicted RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	C9orf72	Q96LT7	481 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	TRIB3	Q96RU7	358 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	BPIFA3	Q9BQP9	254 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	EFHD1	Q9BUP0	239 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	TRIT1	Q9H3H1	467 aa	Known RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	EPB41L1	Q9H4G0	881 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	PCDH9	Q9HC56	1237 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	SLC23A2	Q9UGH3	650 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	TP53TG5	Q9Y2B4	290 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	RPS6KL1	Q9Y6S9	549 aa		11.02	□□□□□ -0.65
PTPN7-204	ENST00000462815	CELSR2	Q9HCU4	2923 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	C1orf232	A0A0U1RR37	186 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	RGSL1	A5PLK6	1076 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	POLR1C	O15160	346 aa	Predicted RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	GRID2	O43424	1007 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ASMTL	O95671	621 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	PDGFA	P04085	211 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	XRCC1	P18887	633 aa	Predicted RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	CES1	P23141	567 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	PBX1	P40424	430 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	SLC19A1	P41440	591 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	LEPR	P48357	1165 aa	Known RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF165	P49910	485 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	SH3BP2	P78314	561 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	TYRO3	Q06418	890 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	LAMB3	Q13751	1172 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	IFI16	Q16666	785 aa	Known RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	KHDC1	Q4VXA5	237 aa	Known RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	LACTB2	Q53H82	288 aa	Predicted RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ANKRD20A8P	Q5CZ79	823 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	FIGN	Q5HY92	759 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	CCDC183	Q5T5S1	534 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	TIGD7	Q6NT04	549 aa	Predicted RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ADGRG6	Q86SQ4	1221 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	TMEM135	Q86UB9	458 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF547	Q8IVP9	402 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	NDUFAF2	Q8N183	169 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ESX1	Q8N693	406 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	GPR26	Q8NDV2	337 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	SH3KBP1	Q96B97	665 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	TADA1	Q96BN2	335 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	HDAC11	Q96DB2	347 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	RNF31	Q96EP0	1072 aa		11.01	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms