RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PTPRCAPQ14761 206 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 RPS6KA1Q15418 735 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 ATP13A5Q4VNC0 1218 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 GLT6D1Q7Z4J2 308 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 ADGRG6Q86SQ4 1221 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 SLC13A5Q86YT5 568 aaPredicted RBP12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 ATXN7L3BQ96GX2 97 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 TMEM121Q9BTD3 319 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 OR2AG1Q9H205 316 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 CARD9Q9H257 536 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 SYNDIG1Q9H7V2 258 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 GRPEL1Q9HAV7 217 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 RAXQ9Y2V3 346 aa12.61□□□□□ -0.39
PRPF40A-203ENST00000448428 KMT2BQ9UMN6 2715 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 TRBV23OR9-2A0A075B6M9 112 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 A0A1W2PNU3 283 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 CHUKO15111 745 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 PPM1DO15297 605 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 GRID2O43424 1007 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 B4GAT1O43505 415 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 BRINP1O60477 761 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 METTL18O95568 372 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 EML2O95834 649 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 MPOP05164 745 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 PDX1P52945 283 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 GDF10P55107 478 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 PEX6Q13608 980 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 CHRNA6Q15825 494 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 PARP6Q2NL67 630 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 KHDC1Q4VXA5 237 aaKnown RBP12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 SEL1L2Q5TEA6 688 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 DENND5AQ6IQ26 1287 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 ARHGEF18Q6ZSZ5 1173 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 SPRED1Q7Z699 444 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 CCNJLQ8IV13 435 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 KLHDC8BQ8IXV7 354 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 DTX3LQ8TDB6 740 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 ATG4AQ8WYN0 398 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 GRAMD1AQ96CP6 724 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 VPS35Q96QK1 796 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 GFM1Q96RP9 751 aaKnown RBP12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 ARNT2Q9HBZ2 717 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 PPP2R2CQ9Y2T4 447 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 PKP3Q9Y446 797 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 KCTD3Q9Y597 815 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 ARL5AQ9Y689 179 aa12.6□□□□□ -0.39
PRPF40A-203ENST00000448428 USP24Q9UPU5 2620 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ZNF106Q9H2Y7 1883 aaKnown RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 IGF2RP11717 2491 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 RHPN2P1A8MT19 583 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 GPR89AB7ZAQ6 455 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 D6RAR5 112 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 GAPDHSO14556 408 aaPredicted RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 STX7O15400 261 aaKnown RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 LIASO43766 372 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A9O60656 530 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 MTX2O75431 263 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 GPR89BP0CG08 455 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ACP5P13686 325 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A6P19224 532 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 LPOP22079 712 aaPredicted RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A1P22309 533 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A4P22310 534 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ALDH4A1P30038 563 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 CA5AP35218 305 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A3P35503 534 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A5P35504 534 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 SPAM1P38567 509 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 LSSP48449 732 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 OR1D5P58170 312 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 GABREP78334 506 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 TAF1AQ15573 450 aaPredicted RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ZDHHC20Q5W0Z9 365 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 KCTD11Q693B1 232 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 FAM151BQ6UXP7 276 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ZNF438Q7Z4V0 828 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 B3GNT8Q7Z7M8 397 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 PHYKPLQ8IUZ5 450 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 BRSK1Q8TDC3 778 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 C1orf54Q8WWF1 131 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 PPP1R2P1Q96PQ5 205 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ALS2CR12Q96Q35 445 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 TBL1YQ9BQ87 522 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 POLR1BQ9H9Y6 1135 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A7Q9HAW7 530 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A10Q9HAW8 530 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 UGT1A8Q9HAW9 530 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 TBC1D29Q9UFV1 150 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 SLC23A2Q9UGH3 650 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ATXN7L1Q9ULK2 861 aaPredicted RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 SATB2Q9UPW6 733 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 KCNK6Q9Y257 313 aa12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 URB1O60287 2271 aaKnown RBP12.59□□□□□ -0.39
PRPF40A-203ENST00000448428 ASPMQ8IZT6 3477 aa12.58□□□□□ -0.39
PRPF40A-203ENST00000448428 ADAMTS20P59510 1910 aa12.58□□□□□ -0.39
PRPF40A-203ENST00000448428 GLYATL1P3A0A0U1RQE8 302 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 PMS2P1A4D2B8 440 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 GOLGA6L3A6NEY3 463 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 C2orf81A6NN90 581 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms