RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FAM151BQ6UXP7 276 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 PCGF5Q86SE9 256 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 TRIM74Q86UV6 250 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 PARGQ86W56 976 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 KIAA2013Q8IYS2 634 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 SLC25A45Q8N413 288 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 SAP25Q8TEE9 199 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 GLYATL1Q969I3 302 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 SNF8Q96H20 258 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 SGSM3Q96HU1 749 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 TBATAQ96M53 351 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 WDR92Q96MX6 357 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 PWWP2AQ96N64 755 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 HINFPQ9BQA5 517 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 TRIM56Q9BRZ2 755 aaKnown RBP12.32□□□□□ -0.44
USP40-205ENST00000430158 SUDS3Q9H7L9 328 aaPredicted RBP12.32□□□□□ -0.44
USP40-205ENST00000430158 BFARQ9NZS9 450 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 WHRNQ9P202 907 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 SOX13Q9UN79 622 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 PKP3Q9Y446 797 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 ST14Q9Y5Y6 855 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 CCDC78A2IDD5 438 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CCDC162PA2VCL2 907 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CTAGE15A4D2H0 777 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 SDR42E2A6NKP2 422 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 C4orf47A7E2U8 309 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 SMAPO00193 183 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CACNB4O00305 520 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 INPP4BO15327 924 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 DNAJC6O75061 913 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 SRP72O76094 671 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 CER1O95813 267 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 IVLP07476 585 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CTAGE8P0CG41 777 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 NMBRP28336 390 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 EPHA8P29322 1005 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 ARCN1P48444 511 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 POLD2P49005 469 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CDKN1CP49918 316 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 THOP1P52888 689 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 SRP54P61011 504 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 SARNPP82979 210 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 TMPRSS15P98073 1019 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 BNIP3Q12983 259 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 NFATC2Q13469 925 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 LAMB3Q13751 1172 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 SEPT6Q14141 434 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 PTK2BQ14289 1009 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 SKIDA1Q1XH10 827 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 ZNF648Q5T619 568 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 STPG1Q5TH74 334 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 ENPP7Q6UWV6 458 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 ZDHHC24Q6UX98 284 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 NLRP9Q7RTR0 991 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 ADGRG6Q86SQ4 1221 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 TMEM135Q86UB9 458 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CTAGE6Q86UF2 777 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 IGDCC3Q8IVU1 814 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CTAGE4Q8IX94 777 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 PIANPQ8IYJ0 282 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 RBFAQ8N0V3 343 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 MNS1Q8NEH6 495 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 OR56A4Q8NGH8 313 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 ZNF398Q8TD17 642 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 TSACCQ96A04 125 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 KCTD12Q96CX2 325 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 CCDC97Q96F63 343 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 PDXPQ96GD0 296 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 FCRL3Q96P31 734 aaPredicted RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 GTPBP2Q9BX10 602 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 CARD6Q9BX69 1037 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 TRIM31Q9BZY9 425 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 TMEM9BQ9NQ34 198 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 MRPL40Q9NQ50 206 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 UCKL1Q9NWZ5 548 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 DMGDHQ9UI17 866 aaKnown RBP12.31□□□□□ -0.44
USP40-205ENST00000430158 APPL1Q9UKG1 709 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 TMEM98Q9Y2Y6 226 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 PCDHGB2Q9Y5G2 931 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 CACNA1AO00555 2505 aa12.31□□□□□ -0.44
USP40-205ENST00000430158 DCHS1Q96JQ0 3298 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 IGLV3-16A0A075B6K0 115 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 ZCWPW2A0A1B0GU75 182 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 FAM237BA0A1B0GVD1 139 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PRSS38A1L453 326 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 OR51F1A6NGY5 319 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PRR19A6NJB7 356 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 E7ESA3 106 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 CHUKO15111 745 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 SGTAO43765 313 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PIAS2O75928 621 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PRAMEF1O95521 474 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PRSS56P0CW18 603 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 DGKAP23743 735 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 HTR1BP28222 390 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 FOXN2P32314 431 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 HADHAP40939 763 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 HK3P52790 923 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 B4GALNT1Q00973 533 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 SLC7A5Q01650 507 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms