RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 IRX1P78414 480 aaPredicted RBP14.75□□□□□ -0.05
USP4-203ENST00000415188 CYP4F8P98187 520 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 SULT2A1Q06520 285 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 SQLEQ14534 574 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 GPR158Q5T848 1215 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 NXNQ6DKJ4 435 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 ZFP1Q6P2D0 407 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 PTAR1Q7Z6K3 402 aaPredicted RBP14.75□□□□□ -0.05
USP4-203ENST00000415188 SDCCAG8Q86SQ7 713 aaPredicted RBP14.75□□□□□ -0.05
USP4-203ENST00000415188 ITIH5Q86UX2 942 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 MFN1Q8IWA4 741 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 DSELQ8IZU8 1212 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 LGI2Q8N0V4 545 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 PELI3Q8N2H9 469 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 CLDN23Q96B33 292 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 PLD4Q96BZ4 506 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 CATSPER2Q96P56 530 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 LRRC3BQ96PB8 259 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 NDNQ99608 321 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 TTC1Q99614 292 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 ECSITQ9BQ95 431 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 IL21Q9HBE4 155 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 INTS10Q9NVR2 710 aaKnown RBP14.75□□□□□ -0.05
USP4-203ENST00000415188 GTSE1Q9NYZ3 720 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 PIAS3Q9Y6X2 628 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 COL4A2P08572 1712 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 F5P12259 2224 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 CCDC189A1A4V9 331 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 ARNTLO00327 626 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 CASQ2O14958 399 aaPredicted RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 LAMTOR5O43504 91 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 BUD23O43709 281 aaKnown RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 KIF1CO43896 1103 aaKnown RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 PEX1O43933 1283 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 CRTAMO95727 393 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 HMBSP08397 361 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 ATP5C1P36542 298 aaKnown RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 ACVRL1P37023 503 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 CCR10P46092 362 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 ARSDP51689 593 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 GNA12Q03113 381 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 IHHQ14623 411 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 VEPH1Q14D04 833 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 PDCD2Q16342 344 aaPredicted RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 TYSND1Q2T9J0 566 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 ZNF789Q5FWF6 425 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 CHST9Q7L1S5 443 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 TMEM126BQ8IUX1 230 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 ZNF687Q8N1G0 1237 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 SLC26A7Q8TE54 656 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 SHCBP1LQ9BZQ2 653 aa14.74□□□□□ -0.05
USP4-203ENST00000415188 C6orf203Q9P0P8 240 aaPredicted RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 MRPS17Q9Y2R5 130 aaKnown RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 COPG1Q9Y678 874 aaKnown RBP14.74□□□□□ -0.05
USP4-203ENST00000415188 TICRRQ7Z2Z1 1910 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 MAGEA13PA6NCF6 341 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 AIM2O14862 343 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 CD3EAPO15446 510 aaKnown RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 CLDN11O75508 207 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 PRAMEF12O95522 483 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 GOT2P00505 430 aaKnown RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 HOXD9P28356 352 aaPredicted RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 ETFBP38117 255 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 CSTF1Q05048 431 aaKnown RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 ART3Q13508 389 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 CAPRIN2Q6IMN6 1127 aaKnown RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 RAB44Q7Z6P3 723 aaPredicted RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 CUZD1Q86UP6 607 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 KBTBD6Q86V97 674 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 HPS6Q86YV9 775 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 YAF2Q8IY57 180 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 RHEBL1Q8TAI7 183 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 DLG3Q92796 817 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 SGF29Q96ES7 293 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 ZFYVE19Q96K21 471 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 PSKH2Q96QS6 385 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 TRIB3Q96RU7 358 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 TCF12Q99081 682 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 NELL2Q99435 816 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 CINPQ9BW66 212 aaPredicted RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 SMG9Q9H0W8 520 aaKnown RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 CCSER2Q9H7U1 834 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 TRPV5Q9NQA5 729 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 CATSPERZQ9NTU4 200 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 UBA2Q9UBT2 640 aaPredicted RBP14.73□□□□□ -0.05
USP4-203ENST00000415188 SCOCQ9UIL1 159 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 VPS9D1Q9Y2B5 631 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 GVINP1Q7Z2Y8 2422 aa14.73□□□□□ -0.05
USP4-203ENST00000415188 ILVBLA1L0T0 632 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 MAN2B1O00754 1011 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 KDELR3O43731 214 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 ZMPSTE24O75844 475 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 FGF19O95750 216 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 RPS9P46781 194 aaKnown RBP14.72□□□□□ -0.05
USP4-203ENST00000415188 SOX9P48436 509 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 PSMD8P48556 350 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 PGGT1BP53609 377 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 CDKN2DP55273 166 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 OXCT1P55809 520 aa14.72□□□□□ -0.05
USP4-203ENST00000415188 FCHO2Q0JRZ9 810 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms