RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KLRC4O43908 158 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 FAM155BO75949 473 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 LETM1O95202 739 aaPredicted RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 FGFR1OPO95684 399 aaKnown RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 POLBP06746 335 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 FAM163BP0C2L3 166 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ANXA13P27216 316 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 TWF1Q12792 350 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 FOXE3Q13461 319 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 NFIL3Q16649 462 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 EDRF1Q3B7T1 1238 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 GALNTL6Q49A17 601 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ZNF658Q5TYW1 1059 aaPredicted RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 WSCD1Q658N2 575 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 KIAA0895LQ68EN5 471 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 SPATA2LQ8IUW3 424 aaPredicted RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 ADGRF2Q8IZF7 708 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 KIAA0895Q8NCT3 520 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 TMEM174Q8WUU8 243 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 TAF4BQ92750 862 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 PGLYRP2Q96PD5 576 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 SEPT5Q99719 369 aaPredicted RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 IKZF4Q9H2S9 585 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 GOLPH3LQ9H4A5 285 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 EPHX3Q9H6B9 360 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 KLC4Q9NSK0 619 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 SYBUQ9NX95 663 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 DDX43Q9NXZ2 648 aaKnown RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 UXTQ9UBK9 157 aaPredicted RBP6.58□□□□□ -1.36
USP40-202ENST00000409945 USP22Q9UPT9 525 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 CNTN6Q9UQ52 1028 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 TRAF3IP3Q9Y228 551 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 VWA8A3KMH1 1905 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 BICDL2A1A5D9 508 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 TMEM221A6NGB7 291 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 H0Y3Z8 333 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 M0R296 226 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 PPEF2O14830 753 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 SNX2O60749 519 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 NR2F6P10588 404 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 LAMP2P13473 410 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 PSG6Q00889 435 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 LRRC63Q05C16 580 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ENPEPQ07075 957 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 CCDC173Q0VFZ6 552 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 CETN1Q12798 172 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 PNOCQ13519 176 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 SGSM1Q2NKQ1 1148 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ZNF699Q32M78 642 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ZNF667Q5HYK9 610 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 MIIPQ5JXC2 388 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 FAM90A2PQ658T7 463 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 C16orf89Q6UX73 402 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 Q6ZPA2 131 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 TTC39CQ8N584 583 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 MACROD1Q9BQ69 325 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ZCWPW1Q9H0M4 648 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 CDH9Q9ULB4 789 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 CA14Q9ULX7 337 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 YIPF1Q9Y548 306 aa6.58□□□□□ -1.36
USP40-202ENST00000409945 ANK1P16157 1881 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 MTMR11A4FU01 709 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 NARSO43776 548 aaKnown RBP6.57□□□□□ -1.36
USP40-202ENST00000409945 WDR47O94967 919 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 PTMAP06454 111 aaKnown RBP6.57□□□□□ -1.36
USP40-202ENST00000409945 CSH1P0DML2 217 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 CSH2P0DML3 217 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 CDC25CP30307 473 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 HOXD13P35453 343 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 GNL1P36915 607 aaPredicted RBP6.57□□□□□ -1.36
USP40-202ENST00000409945 PIK3CAP42336 1068 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 VAMP7P51809 220 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 FKBP3Q00688 224 aaKnown RBP6.57□□□□□ -1.36
USP40-202ENST00000409945 PDCLQ13371 301 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 P3H1Q32P28 736 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 CENPPQ6IPU0 288 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 Q6YL49 198 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 PDCL2Q8N4E4 241 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 BEND2Q8NDZ0 799 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 RUBCNQ92622 972 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 FGF13Q92913 245 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 LENG8Q96PV6 779 aaPredicted RBP6.57□□□□□ -1.36
USP40-202ENST00000409945 SAP30LQ9HAJ7 183 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 CDH22Q9UJ99 828 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 DUSP12Q9UNI6 340 aa6.57□□□□□ -1.36
USP40-202ENST00000409945 EPN1Q9Y6I3 576 aaPredicted RBP6.57□□□□□ -1.36
USP40-202ENST00000409945 C5orf42Q9H799 3197 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 LINC00473A8K010 186 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 HMGB1P1B2RPK0 211 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 SLC16A3O15427 465 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 TACC1O75410 805 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 PMPCBO75439 489 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 SEC24AO95486 1093 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 OR4Q2P0C623 313 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 HSD3B1P14060 373 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 WARSP23381 471 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 GTF2H1P32780 548 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ARL4CP56559 192 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 LSM12Q3MHD2 195 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 CCDC183Q5T5S1 534 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms