RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 LYSMD1Q96S90 227 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 RBBP8Q99708 897 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 LRFN3Q9BTN0 628 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TUBB6Q9BUF5 446 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 SAR1AQ9NR31 198 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 WSB2Q9NYS7 404 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 SPO11Q9Y5K1 396 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 MYLKQ15746 1914 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 IGHV1OR15-9A0A0B4J2B8 117 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ZCWPW2A0A1B0GU75 182 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 LRRC72A6NJI9 287 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 TPP1O14773 563 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MGRN1O60291 552 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 DNAJC6O75061 913 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ALDOAP04075 364 aaKnown RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ERVK-10P10266 1014 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 VIPR1P32241 457 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MMP12P39900 470 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 HADHAP40939 763 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 SERPINB8P50452 374 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ARFIP2P53365 341 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 NUBP1P53384 320 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 LIMK2P53671 638 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PDE1BQ01064 536 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 RALGDSQ12967 914 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 RIPK1Q13546 671 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 CDKN3Q16667 212 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 TMEM52BQ4KMG9 183 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 CERCAMQ5T4B2 595 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 TSPAN33Q86UF1 283 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PARP9Q8IXQ6 854 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PTCD2Q8WV60 388 aaKnown RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 INPP5DQ92835 1189 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 THOC1Q96FV9 657 aaKnown RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 WRAP53Q9BUR4 548 aaKnown RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 KIFC1Q9BW19 673 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 FAM126AQ9BYI3 521 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MRM3Q9HC36 420 aaKnown RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 C1orf232A0A0U1RR37 186 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PRR23AA6NEV1 266 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 AURKAO14965 403 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MAP3K13O43283 966 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MMP20O60882 483 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 CLDN7O95471 211 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 SEMA4FO95754 770 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MPOP05164 745 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 SP9P0CG40 484 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 LHCGRP22888 699 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 RASSF2P50749 326 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 TMPRSS15P98073 1019 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PTSQ03393 145 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PDE1CQ14123 709 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ARHGEF7Q14155 803 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ZNF528Q3MIS6 628 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 TEDDM1Q5T9Z0 273 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 LRRC66Q68CR7 880 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PDPK2PQ6A1A2 396 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 NEK5Q6P3R8 708 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D1Q86TI0 1168 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 OR2T34Q8NGX1 318 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 RFWD2Q8NHY2 731 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 BRSK1Q8TDC3 778 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 NELL1Q92832 810 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 RAB3IPQ96QF0 476 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 GPR174Q9BXC1 333 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 GPR63Q9BZJ6 419 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ZFYVE1Q9HBF4 777 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 PREBQ9HCU5 417 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 HACD3Q9P035 362 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 MBD1Q9UIS9 605 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ZFP69BQ9UJL9 534 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 ANKRD36A6QL64 1941 aa13.35□□□□□ -0.27
LIMS1-204ENST00000409441 CUL9Q8IWT3 2517 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 IGLON5A6NGN9 336 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 GOLGA8CPA6NN73 597 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 RNGTTO60942 597 aaKnown RBP13.34□□□□□ -0.27
LIMS1-204ENST00000409441 NDUFS2O75306 463 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 SNNO75324 88 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-204ENST00000409441 RPS21P63220 83 aaKnown RBP13.34□□□□□ -0.27
LIMS1-204ENST00000409441 OCRLQ01968 901 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 BST1Q10588 318 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 OVGP1Q12889 678 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 POU6F1Q14863 301 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 CHI3L2Q15782 390 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 SNCBQ16143 134 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 CCDC153Q494R4 210 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 PCID2Q5JVF3 399 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 FAM91A1Q658Y4 838 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 CES3Q6UWW8 571 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 LIPIQ6XZB0 460 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 LYSMD3Q7Z3D4 306 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 STRA8Q7Z7C7 330 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 KCNMB4Q86W47 210 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 CBARPQ8N350 705 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-204ENST00000409441 CXorf40AQ8TE69 158 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 EID2BQ96D98 161 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 SPACA7Q96KW9 195 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 SIKE1Q9BRV8 207 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 LRMDAQ9H2I8 198 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 KCNK4Q9NYG8 393 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms