RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 PRPF19Q9UMS4 504 aaKnown RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 HS3ST2Q9Y278 367 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 STX16-NPEPL1H3BU86 382 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 STX16O14662 325 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 AIM2O14862 343 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 GRM6O15303 877 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 TLL1O43897 1013 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 CLASP2O75122 1294 aaKnown RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 ZNF821O75541 412 aaPredicted RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 RPS17P08708 135 aaKnown RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 PTPN2P17706 415 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 RPS3P23396 243 aaKnown RBP eCLIP14.84□□□□□ -0.035e-7■□□□□ 8.4
CBX3-202ENST00000396386 HLA-FP30511 346 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 HNF1BP35680 557 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 CTSOP43234 321 aaPredicted RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 PTDSS1P48651 473 aaKnown RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 STK19P49842 368 aaPredicted RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 CDH13P55290 713 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 SESN3P58005 492 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 SLC34A1Q06495 639 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 MAPRE2Q15555 327 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 TXNDC11Q6PKC3 985 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 MYLK4Q86YV6 388 aaPredicted RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 CPNE9Q8IYJ1 553 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 CLYBLQ8N0X4 340 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 POF1BQ8WVV4 589 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 ISG20Q96AZ6 181 aaKnown RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 RCN3Q96D15 328 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 C19orf60Q96EN9 201 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 RPL10LQ96L21 214 aaKnown RBP14.84□□□□□ -0.03
CBX3-202ENST00000396386 CLPBQ9H078 707 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 MID1IP1Q9NPA3 183 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 APPL1Q9UKG1 709 aa14.84□□□□□ -0.03
CBX3-202ENST00000396386 LRRC14BA6NHZ5 514 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 NEDD8-MDP1E9PL57 170 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 GAPDHSO14556 408 aaPredicted RBP14.83□□□□□ -0.04
CBX3-202ENST00000396386 UBDO15205 165 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 RFPL2O75678 378 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 CDK14O94921 469 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 ZNF7P17097 686 aaPredicted RBP14.83□□□□□ -0.04
CBX3-202ENST00000396386 GCKP35557 465 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 GTF2A1P52655 376 aaPredicted RBP14.83□□□□□ -0.04
CBX3-202ENST00000396386 LCP2Q13094 533 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 GEN1Q17RS7 908 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 TMEM240Q5SV17 173 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 LYPLAL1Q5VWZ2 237 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 KANK2Q63ZY3 851 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 SNX20Q7Z614 316 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 SERPINA9Q86WD7 417 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 RBFAQ8N0V3 343 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 ZNF557Q8N988 423 aaPredicted RBP14.83□□□□□ -0.04
CBX3-202ENST00000396386 KYQ8NBH2 561 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 RIN3Q8TB24 985 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 DTX3LQ8TDB6 740 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 JADE3Q92613 823 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 SARS2Q9NP81 518 aaKnown RBP14.83□□□□□ -0.04
CBX3-202ENST00000396386 MCM8Q9UJA3 840 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 GNPTGQ9UJJ9 305 aa14.83□□□□□ -0.04
CBX3-202ENST00000396386 AZIN1O14977 448 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 KLK8O60259 260 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 FKBP6O75344 327 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 MOSPD3O75425 235 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 CLDN7O95471 211 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 RHOP08100 348 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 FGF4P08620 206 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 HOXA9P31269 272 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 SPAM1P38567 509 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 CLCN7P51798 805 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 AP2B1P63010 937 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 SH3BP2P78314 561 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 CLCQ05315 142 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 NFATC2Q13469 925 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 CDKN3Q16667 212 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 ANKS6Q68DC2 871 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 PTRHD1Q6GMV3 140 aaKnown RBP14.82□□□□□ -0.04
CBX3-202ENST00000396386 GRAMD4Q6IC98 578 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 FBXW8Q8N3Y1 598 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 PCDH20Q8N6Y1 951 aaKnown RBP14.82□□□□□ -0.04
CBX3-202ENST00000396386 LEMD2Q8NC56 503 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 EEF1AKMT1Q8WVE0 214 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 NSUN5Q96P11 429 aaKnown RBP14.82□□□□□ -0.04
CBX3-202ENST00000396386 C1QTNF3Q9BXJ4 246 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 CEP44Q9C0F1 390 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 ASB8Q9H765 288 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 RWDD3Q9Y3V2 267 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 SLC4A7Q9Y6M7 1214 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 DOCK6Q96HP0 2047 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 PLXNB3Q9ULL4 1909 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 TRBV5-4A0A0C4DH59 114 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 GLYATL1P3A0A0U1RQE8 302 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 SOBPA7XYQ1 873 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 SNX2O60749 519 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 TBX10O75333 385 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 GPC4O75487 556 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 PABPC1P11940 636 aaKnown RBP14.82□□□□□ -0.04
CBX3-202ENST00000396386 BMP1P13497 986 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 CD1EP15812 388 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 VHLP40337 213 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 ATP4BP51164 291 aa14.82□□□□□ -0.04
CBX3-202ENST00000396386 MTTPP55157 894 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms