RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GOLT1BQ9Y3E0 138 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RIPK3Q9Y572 518 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SPTBP11277 2137 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TCOF1Q13428 1488 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TTC26A0AVF1 554 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 LAD1O00515 517 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 OR10H3O60404 316 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 APOL3O95236 402 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RBL1P28749 1068 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SEC24CP53992 1094 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CTBP2P56545 445 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GNB2P62879 340 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PSPHP78330 225 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CRYZQ08257 329 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CD47Q08722 323 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ITGA9Q13797 1035 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TIMM50Q3ZCQ8 353 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SLFNL1Q499Z3 407 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ARL6IP4Q66PJ3 421 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GLT6D1Q7Z4J2 308 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SYNE4Q8N205 404 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 FBXO30Q8TB52 745 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 NSUN6Q8TEA1 469 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 EYA1Q99502 592 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CCDC28BQ9BUN5 200 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ACAT2Q9BWD1 397 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TRIM9Q9C026 710 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ABCG8Q9H221 673 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CHRAC1Q9NRG0 131 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GTF2IRD1Q9UHL9 959 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 AGO2Q9UKV8 859 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PDE10AQ9Y233 779 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PDE4DIPQ5VU43 2346 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ASCC3Q8N3C0 2202 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM265A0A087WTH1 108 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 FAM234BA2RU67 622 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 USP17L10C9JJH3 530 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RBAK-RBAKDNI3L0D1 243 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 KLK3P07288 261 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ARAFP10398 606 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CYP2C8P10632 490 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SLC2A3P11169 496 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ADORA1P30542 326 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RORAP35398 523 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GPC5P78333 572 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SP2Q02086 613 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RAB35Q15286 201 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 STILQ15468 1287 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SWT1Q5T5J6 900 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SLX4IPQ5VYV7 408 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RAB12Q6IQ22 244 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PDE12Q6L8Q7 609 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TMC8Q8IU68 726 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ANKRD13AQ8IZ07 590 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 LINC00469Q8N7U9 141 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PHF10Q8WUB8 498 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 DAZAP1Q96EP5 407 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CCDC17Q96LX7 622 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 QRFPRQ96P65 431 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 MCEEQ96PE7 176 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SPATA5L1Q9BVQ7 753 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 DNAJC5Q9H3Z4 198 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TOR3AQ9H497 397 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 THAP1Q9NVV9 213 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GRID1Q9ULK0 1009 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 DOPEY2Q9Y3R5 2298 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF804BA4D1E1 1349 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 DRGXA6NNA5 263 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GPR182O15218 404 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TSPAN6O43657 245 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ZMPSTE24O75844 475 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GLSO94925 669 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CD63P08962 238 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 IL1R1P14778 569 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 MATKP42679 507 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 MAGEA4P43358 317 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RRAS2P62070 204 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 NPATQ14207 1427 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 QRICH1Q2TAL8 776 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 HKDC1Q2TB90 917 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 KANK2Q63ZY3 851 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF730Q6ZMV8 503 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF704Q6ZNC4 412 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 LINC00523Q86TU6 105 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF589Q86UQ0 364 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SIMC1Q8NDZ2 872 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ZFP28Q8NHY6 868 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 MCFD2Q8NI22 146 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TMCO6Q96DC7 493 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RBM18Q96H35 190 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PANX3Q96QZ0 392 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM79Q9BSE2 394 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RNF146Q9NTX7 359 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 AASSQ9UDR5 926 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 WDR37Q9Y2I8 494 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TRPV2Q9Y5S1 764 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PITPNM2Q9BZ72 1349 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ANXA2P2A6NMY6 339 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 EIF3HO15372 352 aaKnown RBP eCLIP4.62□□□□□ -1.672e-7■■■■□ 19.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms