RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 TRIM2Q9C040 744 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 DHX33Q9H6R0 707 aaKnown RBP11.48□□□□□ -0.57
VCL-202ENST00000372755 HMGXB4Q9UGU5 601 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 CHD1O14646 1710 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 CASZ1Q86V15 1759 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 IPO13O94829 963 aaKnown RBP11.48□□□□□ -0.57
VCL-202ENST00000372755 RPL7AP62424 266 aaKnown RBP11.48□□□□□ -0.57
VCL-202ENST00000372755 TUSC3Q13454 348 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 SNAP47Q5SQN1 464 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 RASSF5Q8WWW0 418 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 DNAJC19Q96DA6 116 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 APOLD1Q96LR9 279 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 EQTNQ9NQ60 294 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 GMIPQ9P107 970 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 PFDN2Q9UHV9 154 aa11.48□□□□□ -0.57
VCL-202ENST00000372755 A0A1W2PQH9 124 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 WRBO00258 174 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 RGS10O43665 173 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 FKTNO75072 461 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 SCGNO76038 276 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 IGFBP5P24593 272 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CMPK1P30085 196 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 AP3S2P59780 193 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 MTX3Q5HYI7 312 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 GLYATQ6IB77 296 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 FOXR2Q6PJQ5 311 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 VSTM1Q6UX27 236 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CERS6Q6ZMG9 384 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TTC29Q8NA56 475 aaPredicted RBP11.47□□□□□ -0.57
VCL-202ENST00000372755 PNPLA8Q9NP80 782 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TMA7Q9Y2S6 64 aaKnown RBP11.47□□□□□ -0.57
VCL-202ENST00000372755 CNTNAP1P78357 1384 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 FADS2P1A8MWK0 482 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 MEIS2O14770 477 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 DNAJA2O60884 412 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 MATN4O95460 622 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CLDN9O95484 217 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 MARCKSL1P49006 195 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 PNLIPRP1P54315 467 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CDH13P55290 713 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 NOMO1Q15155 1222 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.47□□□□□ -0.57
VCL-202ENST00000372755 PQLC1Q8N2U9 271 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 MAB21L3Q8N8X9 362 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TSSK3Q96PN8 268 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 ETAA1Q9NY74 926 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 FADS3Q9Y5Q0 445 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CLDN4O14493 209 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 GATBO75879 557 aaKnown RBP11.47□□□□□ -0.57
VCL-202ENST00000372755 STXBP1P61764 594 aaKnown RBP11.47□□□□□ -0.57
VCL-202ENST00000372755 FCHO2Q0JRZ9 810 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 EML3Q32P44 896 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TEX44Q53QW1 395 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TNFAIP8L3Q5GJ75 292 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 GPR158Q5T848 1215 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TCEAL6Q6IPX3 200 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 GK5Q6ZS86 529 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 ZFPM1Q8IX07 1006 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 UNC5BQ8IZJ1 945 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 KCNS3Q9BQ31 491 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TAPBPLQ9BX59 468 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CALML5Q9NZT1 146 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 FAM198AQ9UFP1 575 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 STOML2Q9UJZ1 356 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 SMIM35A0A1B0GVV1 85 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 BCKDKO14874 412 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 SIN3BO75182 1162 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 LCA5LO95447 670 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 METTL18O95568 372 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 NFATC1O95644 943 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 SP100P23497 879 aaPredicted RBP11.47□□□□□ -0.57
VCL-202ENST00000372755 SCRN3Q0VDG4 424 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 THAP5Q7Z6K1 395 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 GALNT7Q86SF2 657 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 OR2T34Q8NGX1 318 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 OR2T3Q8NH03 318 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 IRGQQ8WZA9 623 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.47□□□□□ -0.57
VCL-202ENST00000372755 MIOSQ9NXC5 875 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 DEC1Q9P2X7 70 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 TNFRSF11BO00300 401 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 PRNPP04156 253 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 NT5EP21589 574 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CERCAMQ5T4B2 595 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 PLET1Q6UQ28 207 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CMC1Q7Z7K0 106 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 LEMD2Q8NC56 503 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CCDC59Q9P031 241 aaKnown RBP11.47□□□□□ -0.57
VCL-202ENST00000372755 GRIP1Q9Y3R0 1128 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 CEP152O94986 1710 aa11.47□□□□□ -0.57
VCL-202ENST00000372755 FAM237AA0A1B0GTK4 181 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 KLRC4O43908 158 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 STK16O75716 305 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 ZBTB11O95625 1053 aaPredicted RBP11.46□□□□□ -0.57
VCL-202ENST00000372755 IFNW1P05000 195 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 OR1D2P34982 312 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 USP4Q13107 963 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.46□□□□□ -0.57
VCL-202ENST00000372755 C12orf29Q8N999 325 aa11.46□□□□□ -0.57
VCL-202ENST00000372755 FAM47BQ8NA70 645 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms