RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 LLGL2Q6P1M3 1020 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 USP30Q70CQ3 517 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 UBR7Q8N806 425 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 SIMC1Q8NDZ2 872 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 COG5Q9UP83 839 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 TLR6Q9Y2C9 796 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CYP3A4P08684 503 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 FSHRP23945 695 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 SLC16A2P36021 539 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CDH11P55287 796 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CYP2A13Q16696 494 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 MTSS1LQ765P7 747 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 BEND5Q7L4P6 421 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 PCDH20Q8N6Y1 951 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 RTFDC1Q9BY42 306 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ABCC3O15438 1527 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 NPHS1O60500 1241 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ODC1P11926 461 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ACSBG2Q5FVE4 666 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ATF7IP2Q5U623 682 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 NOTUMQ6P988 496 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 POMGNT2Q8NAT1 580 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 PURBQ96QR8 312 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 NMRK2Q9NPI5 230 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 POLRMTO00411 1230 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 HGFP14210 728 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 RPA4Q13156 261 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 SMARCD1Q96GM5 515 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 TM9SF2Q99805 663 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 MAT2BQ9NZL9 334 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 DNAJB6O75190 326 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CD44P16070 742 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ADH6P28332 368 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 POLR2JP52435 117 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 BTBD16Q32M84 506 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 PRAMEF17Q5VTA0 474 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 GPR180Q86V85 440 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 OAS3Q9Y6K5 1087 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 A0A0J9YYE9 177 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 OXSR1O95747 527 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF81P51508 661 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 POU5F1Q01860 360 aaKnown RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 HS6ST3Q8IZP7 471 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 LILRB4Q8NHJ6 448 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 IFT46Q9NQC8 304 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 SCP2D1Q9UJQ7 156 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 SALL1Q9NSC2 1324 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 GSTM3P21266 225 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 CBFBQ13951 182 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 GK3PQ14409 553 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 C12orf65Q9H3J6 166 aaKnown RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 CARNS1A5YM72 827 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PEX14O75381 377 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 HTR7P34969 479 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 CD83Q01151 205 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 QPCTQ16769 361 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 OR52E6Q96RD3 313 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 H3BM21 787 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 CTDNEP1O95476 244 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PTPN3P26045 913 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF543Q08ER8 600 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 RAB41Q5JT25 222 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 DPY19L2Q6NUT2 758 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 NEPROQ6NW34 567 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PRELID2Q8N945 189 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 SMG7Q92540 1137 aaKnown RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 RGCCQ9H4X1 137 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 C19orf12Q9NSK7 152 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 URB1O60287 2271 aaKnown RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PNLIPRP1P54315 467 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 NRG3P56975 720 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 GANCQ8TET4 914 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 MAELQ96JY0 434 aaKnown RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 UCKL1Q9NWZ5 548 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 E2F8A0AVK6 867 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 STAU1O95793 577 aaKnown RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 SERPIND1P05546 499 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 CRATP43155 626 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 KLRC3Q07444 240 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PCBP1Q15365 356 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 ATCAYQ86WG3 371 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PDP1Q9P0J1 537 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-203ENST00000353578 BORCS7-ASMTA0A0B4J1R7 106 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 IFNW1P05000 195 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 C3orf33Q6P1S2 294 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 TMC8Q8IU68 726 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 FAM20CQ8IXL6 584 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 SLC5A5Q92911 643 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 PHF21BQ96EK2 531 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 SNTG2Q9NY99 539 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 UQCRC1P31930 480 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 MBTD1Q05BQ5 628 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 ACBD4Q8NC06 268 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 TMEM159Q96B96 161 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 LURAP1Q96LR2 239 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 KCNN3Q9UGI6 736 aa12.54□□□□□ -0.4
COL6A3-203ENST00000353578 MCIDASD6RGH6 385 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 PROM1O43490 865 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 KAT7O95251 611 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 FCER2P06734 321 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms