RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FARS2O95363 451 aaKnown RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 NUDT17P0C025 328 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 GIMD1P0DJR0 217 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CYP3A7P24462 503 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 DNASE1P24855 282 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 HTR7P34969 479 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CPOXP36551 454 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CD86P42081 329 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CDH17Q12864 832 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 MTAPQ13126 283 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ITGB3BPQ13352 177 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RTP2Q5QGT7 225 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 FAM151BQ6UXP7 276 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RDH11Q8TC12 318 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 PCDH12Q9NPG4 1184 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 NCF1BA6NI72 391 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 OR2AG2A6NM03 316 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 NCF1CA8MVU1 366 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 E5RJQ4 531 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 PGRMC1O00264 195 aaKnown RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RGS16O15492 202 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 SIGLEC6O43699 453 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 NCF1P14598 390 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF28P17035 718 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF30P17039 623 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 TNFSF4P23510 183 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RANBP1P43487 201 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 TNK2Q07912 1038 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 TSNAXIP1Q2TAA8 658 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 AFTPHQ6ULP2 937 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ASB18Q6ZVZ8 466 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ZC3H7AQ8IWR0 971 aaKnown RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 TSACCQ96A04 125 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 TIMD4Q96H15 378 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ZSCAN5AQ9BUG6 496 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 KCTD10Q9H3F6 313 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 DHX33Q9H6R0 707 aaKnown RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 MPP6Q9NZW5 540 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RAI2Q9Y5P3 530 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 TRABD2BA6NFA1 517 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 SOBPA7XYQ1 873 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 SNUPNO95149 360 aaKnown RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 LYPLA2O95372 231 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ACPPP15309 386 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 POLR2CP19387 275 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 VIPR1P32241 457 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 HSF2Q03933 536 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 FCHO2Q0JRZ9 810 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 NECTIN1Q15223 517 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 OTUD3Q5T2D3 398 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 C1orf53Q5VUE5 145 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF574Q6ZN55 896 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 LINC00696Q6ZRV3 163 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 OR7D4Q8NG98 312 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CCDC138Q96M89 665 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 C7orf25Q9BPX7 421 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 ZBP1Q9H171 429 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 WNT8AQ9H1J5 351 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 PCED1AQ9H1Q7 454 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 GANQ9H2C0 597 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 GPR83Q9NYM4 423 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CD84Q9UIB8 345 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 BOKQ9UMX3 212 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 PRSS44E7EML9 344 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 FOXP2O15409 715 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RAD51CO43502 376 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 HYAL3O43820 417 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 DAB1O75553 588 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 FGF1P05230 155 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 HOXC13P31276 330 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 BEND5Q7L4P6 421 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CCDC116Q8IYX3 515 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 STARD8Q92502 1023 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CCSER2Q9H7U1 834 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 NANOGQ9H9S0 305 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 SMURF1Q9HCE7 757 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 BPIFA1Q9NP55 256 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 EPS15L1Q9UBC2 864 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 RUVBL1Q9Y265 456 aaKnown RBP8.35□□□□□ -1.07
HMGB1-203ENST00000341423 C16orf96A6NNT2 1141 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 E7ENQ6 273 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 M0R3G1 203 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 IL2RAP01589 272 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 SP9P0CG40 484 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ITPKAP23677 461 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 SKOR1P84550 965 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 HLA-BQ31612 363 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 C1orf189Q5VU69 101 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 LHX8Q68G74 356 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 PHLDB3Q6NSJ2 640 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 POMZP3Q6PJE2 187 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 NUP54Q7Z3B4 507 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CYP4Z1Q86W10 505 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CILP2Q8IUL8 1156 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 LINC00301Q8NCQ3 95 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 OR56A4Q8NGH8 313 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 DQX1Q8TE96 717 aaKnown RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 STMN2Q93045 179 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 UBE2FQ969M7 185 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms