RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 NUDT7P0C024 238 aa12.78□□□□□ -0.36
USP47-202ENST00000339865 CDK10Q15131 360 aa12.78□□□□□ -0.36
USP47-202ENST00000339865 UNC5AQ6ZN44 842 aa12.78□□□□□ -0.36
USP47-202ENST00000339865 UBE2R2Q712K3 238 aaPredicted RBP12.78□□□□□ -0.36
USP47-202ENST00000339865 PTGR2Q8N8N7 351 aaPredicted RBP12.78□□□□□ -0.36
USP47-202ENST00000339865 MRPL9Q9BYD2 267 aaKnown RBP12.78□□□□□ -0.36
USP47-202ENST00000339865 NOP16Q9Y3C1 178 aaKnown RBP12.78□□□□□ -0.36
USP47-202ENST00000339865 NR2E1Q9Y466 385 aa12.78□□□□□ -0.36
USP47-202ENST00000339865 ZNF227Q86WZ6 799 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 ELOA2Q8IYF1 753 aaPredicted RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 EIF5A2Q9GZV4 153 aaKnown RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 HIPK3Q9H422 1215 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 SAV1Q9H4B6 383 aaPredicted RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 BPIFA1Q9NP55 256 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 GMIPQ9P107 970 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 PEX16Q9Y5Y5 336 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 TULP3O75386 442 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 LSM8O95777 96 aaKnown RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 VAMP1P23763 118 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 ZNF517Q6ZMY9 492 aaPredicted RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 HEXDCQ8WVB3 486 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 UFD1Q92890 307 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 MIPEPQ99797 713 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 MRPL57Q9BQC6 102 aaKnown RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 DDX3XO00571 662 aaKnown RBP eCLIP12.77□□□□□ -0.362e-8■■■□□ 16.4
USP47-202ENST00000339865 CCDC28AQ8IWP9 274 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 FEM1AQ9BSK4 669 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 ANKRA2Q9H9E1 313 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 KCNH7Q9NS40 1196 aa12.77□□□□□ -0.36
USP47-202ENST00000339865 POLR3HQ9Y535 204 aaPredicted RBP12.77□□□□□ -0.36
USP47-202ENST00000339865 ARHGEF17Q96PE2 2063 aaPredicted RBP12.77□□□□□ -0.37
USP47-202ENST00000339865 A0A0J9YYE9 177 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 ZNF878C9JN71 531 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 PRAMEF1O95521 474 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 TIE1P35590 1138 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 PFKPQ01813 784 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 CCINQ13939 588 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 C9orf64Q5T6V5 341 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 ALG1LQ6GMV1 187 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 PAQR7Q86WK9 346 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 TBC1D15Q8TC07 691 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 SEC14L1Q92503 715 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 RTKNQ9BST9 563 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 TRPV2Q9Y5S1 764 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 GPR182O15218 404 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 ICAM3P32942 547 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 ZNF543Q08ER8 600 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 HLFQ16534 295 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 DUS1LQ6P1R4 473 aaKnown RBP12.77□□□□□ -0.37
USP47-202ENST00000339865 ZNF431Q8TF32 576 aaPredicted RBP12.77□□□□□ -0.37
USP47-202ENST00000339865 ABHD5Q8WTS1 349 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 MKL1Q969V6 931 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 ELMO3Q96BJ8 720 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 PPCDCQ96CD2 204 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 HSPA12BQ96MM6 686 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 SSX3Q99909 188 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 MRPL45Q9BRJ2 306 aaKnown RBP12.77□□□□□ -0.37
USP47-202ENST00000339865 MCMBPQ9BTE3 642 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 POLR3BQ9NW08 1133 aaPredicted RBP12.77□□□□□ -0.37
USP47-202ENST00000339865 DDX43Q9NXZ2 648 aaKnown RBP12.77□□□□□ -0.37
USP47-202ENST00000339865 TSPAN16Q9UKR8 245 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 FPGTO14772 594 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 POU2F1P14859 743 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 USP43Q70EL4 1123 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 OR6K6Q8NGW6 343 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 MKLN1Q9UL63 735 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 CHD4Q14839 1912 aa12.77□□□□□ -0.37
USP47-202ENST00000339865 ZSCAN5DPP0CG00 497 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 NEPROQ6NW34 567 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 SYVN1Q86TM6 617 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 DENND1CQ8IV53 801 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 POC1BQ8TC44 478 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 BRD7Q9NPI1 651 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 RAB26Q9ULW5 256 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 C17orf102A2RUQ5 167 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 TBC1D3BA6NDS4 549 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 SEPT4O43236 478 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 SASH3O75995 380 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 USP17L7P0C7H9 530 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 RARAP10276 462 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 MTHFD1P11586 935 aaKnown RBP12.76□□□□□ -0.37
USP47-202ENST00000339865 ZNF16P17020 682 aaPredicted RBP12.76□□□□□ -0.37
USP47-202ENST00000339865 ACADVLP49748 655 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 THAP5Q7Z6K1 395 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 GALNT7Q86SF2 657 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 C8orf48Q96LL4 319 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 ZYG11BQ9C0D3 744 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 POLR1EQ9GZS1 481 aaKnown RBP12.76□□□□□ -0.37
USP47-202ENST00000339865 SLCO1B3Q9NPD5 702 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 AP1M2Q9Y6Q5 423 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 FXR2P51116 673 aaKnown RBP eCLIP12.76□□□□□ -0.377e-7■■■■□ 24.6
USP47-202ENST00000339865 ZNF45Q02386 682 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 PPP3CAQ08209 521 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 ANXA8L1Q5VT79 327 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 TPGS1Q6ZTW0 290 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 ITIH5Q86UX2 942 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 HTATIP2Q9BUP3 242 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 PAK6Q9NQU5 681 aaPredicted RBP12.76□□□□□ -0.37
USP47-202ENST00000339865 FCER2P06734 321 aa12.76□□□□□ -0.37
USP47-202ENST00000339865 MYL6P60660 151 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms