RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FAM171A1Q5VUB5 890 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SULT1C3Q6IMI6 304 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SAMD7Q7Z3H4 446 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CPNE9Q8IYJ1 553 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 DCAKDQ8WVC6 231 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 AGO3Q9H9G7 860 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 BMP7P18075 431 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 C5orf22Q49AR2 442 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 BNIPLQ7Z465 357 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CMASQ8NFW8 434 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 HDAC10Q969S8 669 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CRELD1Q96HD1 420 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CEP41Q9BYV8 373 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PAK6Q9NQU5 681 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 EXD2Q9NVH0 621 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 YDJCA8MPS7 323 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ITGA10O75578 1167 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CHRNGP07510 517 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TIGD2Q4W5G0 525 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PDSS2Q86YH6 399 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TMEM192Q8IY95 271 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 BIRC8Q96P09 236 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PNPOQ9NVS9 261 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAJB9Q9UBS3 223 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC30A4O14863 429 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ORC5O43913 435 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ERN1O75460 977 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 RGS20O76081 388 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PRG2P13727 222 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ERVK-8P63133 956 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 DMPKQ09013 629 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 GALNT3Q14435 633 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAJB3Q8WWF6 145 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CAPSLQ8WWF8 208 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 HNRNPABQ99729 332 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TFB2MQ9H5Q4 396 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM159BA6NKW6 160 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 M0QX08 132 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 GRIA2P42262 883 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TAPT1Q6NXT6 567 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PTCHD4Q6ZW05 846 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 OR5B17Q8NGF7 314 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SKA1Q96BD8 255 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CALML5Q9NZT1 146 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CKLFQ9UBR5 152 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 HNRNPLP14866 589 aaKnown RBP eCLIP10.23□□□□□ -0.772e-7■■■■□ 24.6
CCDC88A-202ENST00000336838 KLHL22Q53GT1 634 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 USP50Q70EL3 339 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TRMT11Q7Z4G4 463 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PEX5LQ8IYB4 626 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SRFBP1Q8NEF9 429 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PLD4Q96BZ4 506 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 NPAS2Q99743 824 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 MAGEH1Q9H213 219 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 MAN1C1Q9NR34 630 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PNMA8BQ9ULN7 279 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 KIAA1217Q5T5P2 1943 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TISP43B9A030 160 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF701M0R085 212 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 USP12O75317 370 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PAGE1O75459 146 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PPM1AP35813 382 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 LIPEQ05469 1076 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC39A12Q504Y0 691 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 LCN1P1Q5VSP4 162 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 SCAIQ8N9R8 606 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 BRSK1Q8TDC3 778 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ACOT12Q8WYK0 555 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 MKLN1Q9UL63 735 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 H0YGN5 161 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 TIPRLO75663 272 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 BCAS2O75934 225 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 RPLP0P05388 317 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF24P17028 368 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 GJA8P48165 433 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAJB13P59910 316 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PLIN5Q00G26 463 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ACOX1Q15067 660 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CHMP1BQ7LBR1 199 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 FAR1Q8WVX9 515 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 LENG8Q96PV6 779 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 COPS8Q99627 209 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 ZSCAN32Q9NX65 697 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 NFS1Q9Y697 457 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 H0YAE9 185 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SYN3O14994 580 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 PAPSS2O95340 614 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CDH5P33151 784 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 AP1S1P61966 158 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CXCL9Q07325 125 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 XKR6Q5GH73 641 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 LLGL2Q6P1M3 1020 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SAMD14Q8IZD0 417 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 KCTD15Q96SI1 283 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 RABL2AQ9UBK7 228 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SALL4Q9UJQ4 1053 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 RABL2BQ9UNT1 228 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 TEX264Q9Y6I9 313 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 FER1L6Q2WGJ9 1857 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ATG13O75143 517 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms