RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 H3BM21 787 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CDC40O60508 579 aaKnown RBP eCLIP12.56□□□□□ -0.4
SDC3-201ENST00000336798 C22orf31O95567 290 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 C1RP00736 705 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 HOXB8P17481 243 aaPredicted RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 ACADLP28330 430 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 PTDSS1P48651 473 aaKnown RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 SNAPC1Q16533 368 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 LDLRAP1Q5SW96 308 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 EEF1DP3Q658K8 133 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 MEIOBQ8N635 442 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 ZNF398Q8TD17 642 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 ARMC5Q96C12 935 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 NOL11Q9H8H0 719 aaKnown RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 PDP1Q9P0J1 537 aaPredicted RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 CKLFQ9UBR5 152 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 PEX10O60683 326 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 MTHFRP42898 656 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CRYBB1P53674 252 aaPredicted RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 NRLP54845 237 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 FOLH1Q04609 750 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 TXNDC11Q6PKC3 985 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 SATL1Q86VE3 508 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 JOSD2Q8TAC2 188 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 MRTO4Q9UKD2 239 aaKnown RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 RAP2CQ9Y3L5 183 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 A0A0J9YYE9 177 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 RHPN2P1A8MT19 583 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 ARHGEF33A8MVX0 844 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CCNDBP1O95273 360 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CYP2C18P33260 490 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 UBE2J2Q8N2K1 259 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 HTRA1Q92743 480 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 GAL3ST3Q96A11 431 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 HBEGFQ99075 208 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 IKZF4Q9H2S9 585 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 EXD2Q9NVH0 621 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 STOML2Q9UJZ1 356 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 FBXO5Q9UKT4 447 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 SNX10Q9Y5X0 201 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 LOC110117498-PIK3R3F6TDL0 507 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 QSOX1O00391 747 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 INMTO95050 263 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 POU2F1P14859 743 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 AHCYP23526 432 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 AMZ1Q400G9 498 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 ZNF613Q6PF04 617 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 TMEM161BQ8NDZ6 487 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 KBTBD8Q8NFY9 601 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 TRPM4Q8TD43 1214 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 SMG7Q92540 1137 aaKnown RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 AIF1LQ9BQI0 150 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CDH19Q9H159 772 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 SLC17A7Q9P2U7 560 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 VWA7Q9Y334 891 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CPS1P31327 1500 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CLTCQ00610 1675 aaKnown RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 SLC31A1O15431 190 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CHRM5P08912 532 aaPredicted RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 TCF4P15884 667 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CAPGP40121 348 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 FMO1Q01740 532 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 SIM2Q14190 667 aaPredicted RBP12.56□□□□□ -0.4
SDC3-201ENST00000336798 DHDDSQ86SQ9 333 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 CUZD1Q86UP6 607 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 DUSP16Q9BY84 665 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 PLEKHA1Q9HB21 404 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 SLCO1B3Q9NPD5 702 aa12.56□□□□□ -0.4
SDC3-201ENST00000336798 OR1F1O43749 312 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 MSCO60682 206 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 NAE1Q13564 534 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 AUHQ13825 339 aaKnown RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 C9orf57Q5W0N0 161 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 HSFY1Q96LI6 401 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 EBNA1BP2Q99848 306 aaKnown RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 HTATIP2Q9BUP3 242 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 WDR37Q9Y2I8 494 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 FCF1Q9Y324 198 aaKnown RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 hCG_1818297A0A087WSY0 165 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 CCDC162PA2VCL2 907 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 ATG13O75143 517 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 CDK14O94921 469 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 NR4A1P22736 598 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 RAB25P57735 213 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 HKDC1Q2TB90 917 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 RNASEH2BQ5TBB1 312 aaKnown RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 LPCAT4Q643R3 524 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 CLEC6AQ6EIG7 209 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 TTC27Q6P3X3 843 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 CHST15Q7LFX5 561 aaPredicted RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 ARNTL2Q8WYA1 636 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 TBC1D10AQ9BXI6 508 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PRDM8Q9NQV8 689 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PCDHGC5Q9Y5F6 944 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 TNS2Q63HR2 1409 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 KLRG2A4D1S0 409 aaPredicted RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 WRBO00258 174 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 ZNF208O43345 1280 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PSMD10O75832 226 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PTPN9P43378 593 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms