RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FSTL5Q8N475 847 aaPredicted RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 GLIS1Q8NBF1 620 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TSTD1Q8NFU3 115 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SMPDL3AQ92484 453 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SPDL1Q96EA4 605 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 AIF1LQ9BQI0 150 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 INTS7Q9NVH2 962 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MKS1Q9NXB0 559 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 C16orf96A6NNT2 1141 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 FKBP9O95302 570 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 HSPA13P48723 471 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MRPL58Q14197 206 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TTMPQ5BVD1 217 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 VITQ6UXI7 678 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 FKBP9P1Q75LS8 142 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 GPR135Q8IZ08 494 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CDYL2Q8N8U2 506 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 GLB1L3Q8NCI6 653 aaPredicted RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 OR9Q1Q8NGQ5 310 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 ROGDIQ9GZN7 287 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 WDR26Q9H7D7 661 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SLCO1B3Q9NPD5 702 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MOCS1Q9NZB8 636 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SLCO3A1Q9UIG8 710 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TSR3Q9UJK0 312 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 VIPP01282 170 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 AMD1P17707 334 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 PSMA4P25789 261 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RXRGP48443 463 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 GATMP50440 423 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 EPS8Q12929 822 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MED21Q13503 144 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 KRT72Q14CN4 511 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CPSF6Q16630 551 aaKnown RBP eCLIP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RNF43Q68DV7 783 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CHSY3Q70JA7 882 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 NATD1Q8N6N6 113 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SPPL3Q8TCT6 385 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 FATE1Q969F0 183 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 OLFM3Q96PB7 478 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 P2RY13Q9BPV8 354 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CENPOQ9BU64 300 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TMEM216Q9P0N5 145 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CLCA2Q9UQC9 943 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 DRGXA6NNA5 263 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TM7SF2O76062 418 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 UNC5CO95185 931 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 HGFP14210 728 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 DHCR24Q15392 516 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MAPKAPK3Q16644 382 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CCDC142Q17RM4 750 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RAVER1Q8IY67 606 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TMEM209Q96SK2 561 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 KLC4Q9NSK0 619 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 IL17CQ9P0M4 197 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MYH10P35580 1976 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 NCF1BA6NI72 391 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 OR5K4A6NMS3 321 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 NCF1CA8MVU1 366 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 TNFRSF10BO14763 440 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SRPRAP08240 638 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ENO2P09104 434 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 NCF1P14598 390 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 HOXB2P14652 356 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 AP5B1Q2VPB7 878 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 HNRNPA1L2Q32P51 320 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 C2orf27AQ580R0 203 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ARL13AQ5H913 290 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 EMC10Q5UCC4 262 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 RGS9BPQ6ZS82 235 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 GPRIN1Q7Z2K8 1008 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 BBS7Q8IWZ6 715 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 DCAKDQ8WVC6 231 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 COG4Q9H9E3 785 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 COL24A1Q17RW2 1714 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 PSMD11O00231 422 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 NPHS1O60500 1241 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CCNDBP1O95273 360 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ZDHHC11BP0C7U3 371 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ITGAXP20702 1163 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 AKT2P31751 481 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 RPL34P49207 117 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 MBTPS1Q14703 1052 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ATAD3BQ5T9A4 648 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ARMC7Q9H6L4 198 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 A0A0J9YYE9 177 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 LINC01553A4QN01 128 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 J3KR12 359 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 DNAJC8O75937 253 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 TRBC1P01850 177 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 RPA3P35244 121 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SLC18A2Q05940 514 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SEMA3BQ13214 749 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 FASTKQ14296 549 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 IL27RAQ6UWB1 636 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 UBE2R2Q712K3 238 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CAND1Q86VP6 1230 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 KRT73Q86Y46 540 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ZBTB2Q8N680 514 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 TRPC4APQ8TEL6 797 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms