RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PADI4Q9UM07 663 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 WASF3Q9UPY6 502 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 NEUROG3Q9Y4Z2 214 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 SCN8AQ9UQD0 1980 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 ASXL3Q9C0F0 2248 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 LY6G6EA0A0G2JKS1 128 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 GOLGA6L10A0A0M3HER8 536 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 FAM221BA6H8Z2 402 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 GRID2O43424 1007 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 DNAJC6O75061 913 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 CDK14O94921 469 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 TOP3BO95985 862 aaKnown RBP13.87□□□□□ -0.19
LIMS1-201ENST00000332345 APRTP07741 180 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 MYF5P13349 255 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 CDH17Q12864 832 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 SMAD1Q15797 465 aaKnown RBP13.87□□□□□ -0.19
LIMS1-201ENST00000332345 LDLRAP1Q5SW96 308 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 TMPRSS7Q7RTY8 843 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 ADGRG6Q86SQ4 1221 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 PRUNE1Q86TP1 453 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 NRROSQ86YC3 692 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 SLC35F3Q8IY50 421 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 GLIS1Q8NBF1 620 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 CCL4L1Q8NHW4 92 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 IFI44Q8TCB0 444 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 ZNF398Q8TD17 642 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 OR2AG1Q9H205 316 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 TAAR2Q9P1P5 351 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 ATXN10Q9UBB4 475 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 MSRB2Q9Y3D2 182 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.87□□□□□ -0.19
LIMS1-201ENST00000332345 U3KQA8 63 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 PTPRBP23467 1997 aa13.87□□□□□ -0.19
LIMS1-201ENST00000332345 ZFC3H1O60293 1989 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 CTAGE9A4FU28 777 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 AP3B1O00203 1094 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 LDB2O43679 373 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A9O60656 530 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 JUPP14923 745 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ZNF8P17098 575 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A6P19224 532 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A1P22309 533 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A4P22310 534 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 AK4P27144 223 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A3P35503 534 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A5P35504 534 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 COILP38432 576 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ACTR1BP42025 376 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ACTR1AP61163 376 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 CDK16Q00536 496 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 TMEM115Q12893 351 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 GTF2H3Q13889 308 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 PTPRCAPQ14761 206 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 POU6F1Q14863 301 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 CYP1B1Q16678 543 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 SKIDA1Q1XH10 827 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 PAPD7Q5XG87 772 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 SLC30A9Q6PML9 568 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 CHST15Q7LFX5 561 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 EFL1Q7Z2Z2 1120 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 GPR156Q8NFN8 814 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 OR52K1Q8NGK4 314 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ZDHHC1Q8WTX9 485 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 STYXQ8WUJ0 223 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 PTCD2Q8WV60 388 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 NAPGQ99747 312 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ZCCHC2Q9C0B9 1178 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ASB8Q9H765 288 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A7Q9HAW7 530 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A10Q9HAW8 530 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 UGT1A8Q9HAW9 530 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 ARFGAP3Q9NP61 516 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 EIF2B3Q9NR50 452 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 KCND1Q9NSA2 647 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 SPATS2LQ9NUQ6 558 aaKnown RBP13.86□□□□□ -0.19
LIMS1-201ENST00000332345 KCTD3Q9Y597 815 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 RP1P56715 2156 aa13.86□□□□□ -0.19
LIMS1-201ENST00000332345 B4DGG1 531 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 CHUKO15111 745 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 KMOO15229 486 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 ZNF185O15231 689 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 OPA1O60313 960 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 SRP72O76094 671 aaKnown RBP13.85□□□□□ -0.19
LIMS1-201ENST00000332345 PRAMEF1O95521 474 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 SPINK2P20155 84 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 ZNF140P52738 457 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-201ENST00000332345 BASP1P80723 227 aaKnown RBP13.85□□□□□ -0.19
LIMS1-201ENST00000332345 TMPRSS15P98073 1019 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 SEPT6Q14141 434 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 ZNF648Q5T619 568 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-201ENST00000332345 GUSBP11Q6P575 273 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 CCDC137Q6PK04 289 aaKnown RBP13.85□□□□□ -0.19
LIMS1-201ENST00000332345 CCNI2Q6ZMN8 369 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-201ENST00000332345 LRRTM4Q86VH4 590 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 CACTIN-AS1Q8N1I8 211 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 KYQ8NBH2 561 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 OR13C4Q8NGS5 318 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 WDR48Q8TAF3 677 aa13.85□□□□□ -0.19
LIMS1-201ENST00000332345 MAPK15Q8TD08 544 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms