RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TTC30BQ8N4P2 665 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 OR6Q1Q8NGQ2 317 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 FRS2Q8WU20 508 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 MRGBPQ9NV56 204 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 FBXO5Q9UKT4 447 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 KIAA1257Q9ULG3 409 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 TNFSF13BQ9Y275 285 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 CAB39Q9Y376 341 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 GTF2E2P29084 291 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 SELPLGQ14242 412 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 STRADAQ7RTN6 431 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 ATP6V0D2Q8N8Y2 350 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 POC5Q8NA72 575 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 C18orf25Q96B23 403 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 NODALQ96S42 347 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 MBOAT4Q96T53 435 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 FDXACB1Q9BRP7 624 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 BTBD2Q9BX70 525 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 NEK6Q9HC98 313 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 TBC1D14Q9P2M4 693 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 GPSM3Q9Y4H4 160 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 SCN4AP35499 1836 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 NRCAMQ92823 1304 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 ADM5C9JUS6 153 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 AGRPO00253 132 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 TNPO2O14787 897 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 PMPCBO75439 489 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 CDK14O94921 469 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 SEC24AO95486 1093 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ENO2P09104 434 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 MTHFRP42898 656 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 UFM1P61960 85 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 HIST2H2ACQ16777 129 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 GLYATQ6IB77 296 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 GALNT13Q8IUC8 556 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 LILRB4Q8NHJ6 448 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 TWIST2Q8WVJ9 160 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 VMP1Q96GC9 406 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 DACH2Q96NX9 599 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 PARVBQ9HBI1 364 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 SLC52A3Q9NQ40 469 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 IL37Q9NZH6 218 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ERVK-18Q9QC07 812 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 SNX5Q9Y5X3 404 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 COL2A1P02458 1487 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 TTC34A8MYJ7 566 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 NUAK1O60285 661 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 MGEA5O60502 916 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 SLC4A1P02730 911 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 CDH1P12830 882 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 PTPN2P17706 415 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 KCNAB2Q13303 367 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 COLEC12Q5KU26 742 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ZNF678Q5SXM1 525 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 FAR1Q8WVX9 515 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 FICDQ9BVA6 458 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 RNF181Q9P0P0 153 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 MOSPD1Q9UJG1 213 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 FBXO9Q9UK97 447 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 U3KQV3 271 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 RFPL2O75678 378 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 SOAT2O75908 522 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ARF4P18085 180 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 FMO3P31513 532 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ARL1P40616 181 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ALDH7A1P49419 539 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 MTPNP58546 118 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 TPI1P60174 286 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 RBM48Q5RL73 367 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 BLOC1S3Q6QNY0 202 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 PHYKPLQ8IUZ5 450 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 DCP1BQ8IZD4 617 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 BPIFB1Q8TDL5 484 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 S100ZQ8WXG8 99 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 TRIB2Q92519 343 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 PTERQ96BW5 349 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 BTN2A3PQ96KV6 586 aa13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 THG1LQ9NWX6 298 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-201ENST00000331194 ILVBLA1L0T0 632 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 BBIP1A8MTZ0 92 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 A8MV72 311 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ZNF99A8MXY4 864 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 SLC1A7O00341 560 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 DEAF1O75398 565 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ARIH2O95376 493 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 C1RP00736 705 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 LTA4HP09960 611 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 IMPDH1P20839 514 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 CXCR2P25025 360 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 UGP2Q16851 508 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 STEAP3Q658P3 488 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 LYSMD2Q8IV50 215 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 RIMKLAQ8IXN7 391 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 REM2Q8IYK8 340 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 DCBLD1Q8N8Z6 715 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 PAPD5Q8NDF8 572 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 OR10Q1Q8NGQ4 319 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 OR13J1Q8NGT2 312 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 FBXO30Q8TB52 745 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 SEPT1Q8WYJ6 367 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms