RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PITRM1Q5JRX3 1037 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 CACHD1Q5VU97 1274 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 LETMD1Q6P1Q0 360 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 GK5Q6ZS86 529 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 NRARPQ7Z6K4 114 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 DHFR2Q86XF0 187 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TBC1D21Q8IYX1 336 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 PARP16Q8N5Y8 322 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 MCUQ8NE86 351 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 FAR1Q8WVX9 515 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 RIT1Q92963 219 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 B3GALT6Q96L58 329 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TEKT5Q96M29 485 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 ZNF578Q96N58 590 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 C12orf57Q99622 126 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 NTPCRQ9BSD7 190 aaKnown RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 GLIS2Q9BZE0 524 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 SAV1Q9H4B6 383 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 POPDC2Q9HBU9 364 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 ACSS2Q9NR19 701 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 SPATA6Q9NWH7 488 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 CDY2AQ9Y6F7 541 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 CDY1Q9Y6F8 540 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TRAV20A0A0B4J274 112 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 A0A1W2PRG6 482 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 KPNA6O60684 536 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 CHRNA1P02708 482 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 C4BPAP04003 597 aaKnown RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 CSTF2P33240 577 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TRIM23P36406 574 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 MAGEA6P43360 314 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 ZNF280AP59817 542 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 MYL6P60660 151 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 S100A12P80511 92 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 KRR1Q13601 381 aaKnown RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 UGP2Q16851 508 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TYW3Q6IPR3 259 aaKnown RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TMEM270Q6UE05 265 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 C4orf19Q8IY42 314 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 GTF3C2Q8WUA4 911 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 SLC7A6Q92536 515 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 ZNF516Q92618 1163 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 AKAP1Q92667 903 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 ELMO3Q96BJ8 720 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 MOCOSQ96EN8 888 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 RBM14Q96PK6 669 aaKnown RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 C6orf62Q9GZU0 229 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 UPF3AQ9H1J1 476 aaKnown RBP11.79□□□□□ -0.52
SHMT2-201ENST00000328923 PLAC1Q9HBJ0 212 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 ZBTB26Q9HCK0 441 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 IFT46Q9NQC8 304 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 TLR9Q9NR96 1032 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 EMC3Q9P0I2 261 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 SLC23A1Q9UHI7 598 aa11.79□□□□□ -0.52
SHMT2-201ENST00000328923 E2F8A0AVK6 867 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 E5RI56 91 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PRKCGP05129 697 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 KDELR1P24390 212 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 DEFA1P59665 94 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 DEFA3P59666 94 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 SCRN3Q0VDG4 424 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 RIN1Q13671 783 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ELOAQ14241 798 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 MFSD10Q14728 455 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 CBX2Q14781 532 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 DDR2Q16832 855 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 HADHQ16836 314 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 NAPRTQ6XQN6 538 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 EFL1Q7Z2Z2 1120 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 CHURC1Q8WUH1 139 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ASPSCR1Q9BZE9 553 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 CCDC90BQ9GZT6 254 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 UNC93B1Q9H1C4 597 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 DEFB129Q9H1M3 183 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PPA2Q9H2U2 334 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ZNF385DQ9H6B1 395 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ANKEF1Q9NU02 776 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 CCM2LQ9NUG4 571 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PAK1IP1Q9NWT1 392 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 KCTD5Q9NXV2 234 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 TMEM5Q9Y2B1 443 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 MRPL11Q9Y3B7 192 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 FAM159BA6NKW6 160 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ZNF99A8MXY4 864 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 LINC00587B1AMM8 73 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 HMGN1P05114 100 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ITGA2P17301 1181 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PCMT1P22061 227 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 RPS12P25398 132 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 FASP25445 335 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PSMD8P48556 350 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PTPN20Q4JDL3 420 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 ALFQ53S48 1182 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 PNCKQ6P2M8 343 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 LRRTM3Q86VH5 581 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 CCDC36Q8IYA8 594 aa11.78□□□□□ -0.52
SHMT2-201ENST00000328923 SMG8Q8ND04 991 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 RPL3LQ92901 407 aaKnown RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 CENPNQ96H22 339 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-201ENST00000328923 TEPSINQ96N21 525 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms