RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 A0A1W2PQ09 198 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 EIF4E1BA6NMX2 242 aaKnown RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 MID1O15344 667 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 MITFO75030 526 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 TMCC2O75069 709 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 DDNO94850 711 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 LINC00271P0C7V0 271 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 SAT1P21673 171 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 UGT1A1P22309 533 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 APOBEC1P41238 236 aaKnown RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 MSH2P43246 934 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 SLC15A1P46059 708 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 MFAP4P55083 255 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 MRPS5P82675 430 aaKnown RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 DLG1Q12959 904 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 STK4Q13043 487 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 SNTA1Q13424 505 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 SETMARQ53H47 684 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 KCNT1Q5JUK3 1230 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 LRCH2Q5VUJ6 765 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 LCN10Q6JVE6 187 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF280DQ6N043 979 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 PAPD4Q6PIY7 484 aaKnown RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 RHBDF2Q6PJF5 856 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 BRAT1Q6PJG6 821 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF517Q6ZMY9 492 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 GPR180Q86V85 440 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 ADHFE1Q8IWW8 467 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 OR2AK2Q8NG84 335 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 HM13Q8TCT9 377 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 ADGRG7Q96K78 797 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 DACH2Q96NX9 599 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 QRFPRQ96P65 431 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 CSF3RQ99062 836 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 MTERF1Q99551 399 aaKnown RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 SRSF8Q9BRL6 282 aaKnown RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 TMX4Q9H1E5 349 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 FBXL2Q9UKC9 423 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 AMDHD2Q9Y303 409 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 RABGAP1Q9Y3P9 1069 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 TMEM184BQ9Y519 407 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-201ENST00000326004 PASKQ96RG2 1323 aa3.32□□□□□ -1.88
HMGB1-201ENST00000326004 LRRC72A6NJI9 287 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 SRRM3A6NNA2 597 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 FAM90A26D6RGX4 464 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 H3BQ06 376 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 AHCYL1O43865 530 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 KDM4BO94953 1096 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 PMS2P2O95744 297 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 S1PR1P21453 382 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 CCKBRP32239 447 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 ACSL1P33121 698 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 ACTN2P35609 894 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 TMPOP42166 694 aaKnown RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 ART1P52961 327 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 PDE1BQ01064 536 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 GRSF1Q12849 480 aaKnown RBP eCLIP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 CDC16Q13042 620 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 KCNC3Q14003 757 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 C15orf59Q2T9L4 293 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 KIF19Q2TAC6 998 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 C18orf63Q68DL7 685 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 NADSYN1Q6IA69 706 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 TRNP1Q6NT89 227 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 TPRG1Q6ZUI0 275 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 CCDC190Q86UF4 302 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 SCYL3Q8IZE3 742 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 POC5Q8NA72 575 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 C9orf106Q8NAJ2 232 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 KCNH5Q8NCM2 988 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 LRRC59Q96AG4 307 aaKnown RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 RHBDF1Q96CC6 855 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 BICD1Q96G01 975 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 TMEM19Q96HH6 336 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 GAD1Q99259 594 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 CMKLR1Q99788 373 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 HRH4Q9H3N8 390 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 GAREM1Q9H706 876 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 GIMAP4Q9NUV9 329 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 TRMT1Q9NXH9 659 aaKnown RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 DBNLQ9UJU6 430 aaKnown RBP3.31□□□□□ -1.88
HMGB1-201ENST00000326004 PCDHGB4Q9UN71 923 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 VDAC3Q9Y277 283 aa3.31□□□□□ -1.88
HMGB1-201ENST00000326004 WDR62O43379 1518 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 PTPRCP08575 1304 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 IGKV2D-30A0A075B6S6 120 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 LOC100509620A0A075B734 347 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 A0A1W2PR77 199 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 OR2A25A4D2G3 310 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 MAGEA13PA6NCF6 341 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 LILRA5A6NI73 299 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 CTDSP2O14595 271 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 ANKRD28O15084 1053 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 SLC28A2O43868 658 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 GJB3O75712 270 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 PAPSS2O95340 614 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 STARD3NLO95772 234 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 CCKARP32238 428 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 USP8P40818 1118 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 EIF2DP41214 584 aaKnown RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms