RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 PWP1Q13610 501 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 SQLEQ14534 574 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 LAPTM4AQ15012 233 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 TGFBIQ15582 683 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 TRAF7Q6Q0C0 670 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 ANKRD49Q8WVL7 239 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 IGSF8Q969P0 613 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 ACOX2Q99424 681 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 DOCK1Q14185 1865 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 TFECO14948 347 aaPredicted RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 SNAP29O95721 258 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 GJA1P17302 382 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 AXLP30530 894 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 TUSC3Q13454 348 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 INSCQ1MX18 579 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 BROXQ5VW32 411 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 SH2D5Q6ZV89 423 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 GATAD2AQ86YP4 633 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 RAVER1Q8IY67 606 aaKnown RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 C8orf59Q8N0T1 100 aaPredicted RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 OLFM1Q99784 485 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 FEM1AQ9BSK4 669 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 ZFP14Q9HCL3 533 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 GTF2IRD1Q9UHL9 959 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 XIRP2A4UGR9 3374 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 BTN3A1O00481 513 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 IRAK2O43187 625 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 RBP1P09455 135 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 SLC35E2BP0CK96 405 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 KCNE1P15382 129 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 GLUD2P49448 558 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 CDKN1CP49918 316 aaPredicted RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 UPP1Q16831 310 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ZYG11AQ6WRX3 759 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 PIWIL3Q7Z3Z3 882 aaKnown RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ADGRG6Q86SQ4 1221 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 LINC00523Q86TU6 105 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 RBM12BQ8IXT5 1001 aaKnown RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ATG16L2Q8NAA4 619 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 DBF4BQ8NFT6 615 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 CENPIQ92674 756 aaPredicted RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ZBTB26Q9HCK0 441 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 LATS2Q9NRM7 1088 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ABCC13Q9NSE7 274 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 KIF13BQ9NQT8 1826 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 FTH1P02794 183 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 RHDQ02161 417 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 PLD1Q13393 1074 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 DDX39BQ13838 428 aaKnown RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ZNF423Q2M1K9 1284 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 FBXL22Q6P050 247 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 FIBCD1Q8N539 461 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 CLHC1Q8NHS4 586 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 SMOXQ9NWM0 555 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 IFT80Q9P2H3 777 aaPredicted RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 CNOT3O75175 753 aaKnown RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 SMIM18P0DKX4 95 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 VARS2Q5ST30 1063 aaKnown RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 OR4K2Q8NGD2 314 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 YIPF2Q9BWQ6 316 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 GPR62Q9BZJ7 368 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 ATP13A1Q9HD20 1204 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 STARD7Q9NQZ5 370 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 TLR9Q9NR96 1032 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 NSMCE4AQ9NXX6 385 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 SMPD3Q9NY59 655 aaPredicted RBP12.59□□□□□ -0.39
RETREG3-201ENST00000309428 IGSF9Q9P2J2 1179 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 DERAQ9Y315 318 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 USP3Q9Y6I4 520 aa12.59□□□□□ -0.39
RETREG3-201ENST00000309428 PSMD11O00231 422 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 XYLBO75191 536 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 CCDC159P0C7I6 412 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 PRKACGP22612 351 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 OR1D2P34982 312 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 GJA8P48165 433 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 ADAM17P78536 824 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 DUS1LQ6P1R4 473 aaKnown RBP12.58□□□□□ -0.39
RETREG3-201ENST00000309428 TMEM53Q6P2H8 277 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 LRRC8DQ7L1W4 858 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 ASB9Q96DX5 294 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 FAR2Q96K12 515 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 CASS4Q9NQ75 786 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 TRHDEQ9UKU6 1024 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 CEPT1Q9Y6K0 416 aa12.58□□□□□ -0.39
RETREG3-201ENST00000309428 H3BNX3 289 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 TSC22D2O75157 780 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 SLC2A4P14672 509 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 POU1F1P28069 291 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 INPP1P49441 399 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 MTPNP58546 118 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 LIPEQ05469 1076 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 PMS2P3Q13401 168 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 RAB39AQ14964 217 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 ZBED5Q49AG3 693 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 PIK3R6Q5UE93 754 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 SMYD5Q6GMV2 418 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 ALKAL1Q6UXT8 129 aa12.58□□□□□ -0.4
RETREG3-201ENST00000309428 GCNT7Q6ZNI0 430 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms