RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CENPXA8MT69 81 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 GRXCR1A8MXD5 290 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TNFRSF10AO00220 468 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ARHGEF9O43307 516 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TBC1D4O60343 1298 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ALOX12P18054 663 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 CYP51A1Q16850 503 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TJAP1Q5JTD0 557 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TPGS2Q68CL5 300 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 NEK5Q6P3R8 708 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TAC4Q86UU9 113 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ZMIZ2Q8NF64 920 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ACDQ96AP0 544 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ZNF669Q96BR6 464 aaPredicted RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 FAR2Q96K12 515 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 RTP3Q9BQQ7 232 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ANKRD60Q9BZ19 345 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.86□□□□□ -0.67
LSM3-201ENST00000306024 KLHL8Q9P2G9 620 aaPredicted RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 MTRRQ9UBK8 725 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 KLHL3Q9UH77 587 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 LSM7Q9UK45 103 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 CNOT11Q9UKZ1 510 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 YIPF1Q9Y548 306 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TRPC5OSA6NMA1 111 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SLC38A8A6NNN8 435 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SOBPA7XYQ1 873 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 DPYSL4O14531 572 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CRCPO75575 148 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CHRNB1P11230 501 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 IL1R2P27930 398 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SLC11A2P49281 568 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 DGCR6Q14129 220 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PCLAFQ15004 111 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ATAD3BQ5T9A4 648 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 STRA8Q7Z7C7 330 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ANKRD13BQ86YJ7 626 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 UNC5BQ8IZJ1 945 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 KREMEN2Q8NCW0 462 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ABHD11Q8NFV4 315 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CTRCQ99895 268 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 IRF2BPLQ9H1B7 796 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 NMRAL1Q9HBL8 299 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 OR12D3Q9UGF7 316 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 TEKT2Q9UIF3 430 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SLCO1B7G3V0H7 640 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ADAM12O43184 909 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 C8AP07357 584 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CHRNGP07510 517 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ERVK-10P10266 1014 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 HAPLN1P10915 354 aaPredicted RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 MYCLP1P12525 358 aaPredicted RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 ADRA1BP35368 520 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 GP5P40197 560 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 HNRNPFP52597 415 aaKnown RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 GPM6BQ13491 265 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 UBE2UQ5VVX9 321 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ZNF555Q8NEP9 628 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CEP19Q96LK0 163 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 C8orf48Q96LL4 319 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CATSPERBQ9H7T0 1116 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 RAP2CQ9Y3L5 183 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 LINC00854A0A1B0GVQ3 168 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SOCS2O14508 198 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 EI24O14681 340 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 UBDO15205 165 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 TEX28O15482 410 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 USP12O75317 370 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SULT1C4O75897 302 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 TBX18O95935 607 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 LDLRP01130 860 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 MT-ND1P03886 318 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 POLBP06746 335 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CA3P07451 260 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PRKACBP22694 351 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PSMB9P28065 219 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 GABRR2P28476 465 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 S100A5P33763 92 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 SCNN1AP37088 669 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PITX1P78337 314 aaPredicted RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 USP10Q14694 798 aaKnown RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 BCL2A1Q16548 175 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PKDCCQ504Y2 493 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 EPGNQ6UW88 154 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PAGE2Q7Z2X7 111 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 PIWIL3Q7Z3Z3 882 aaKnown RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 DDX53Q86TM3 631 aaKnown RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 ARMC8Q8IUR7 673 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CCDC185Q8N715 623 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 OSCP1Q8WVF1 389 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ZNF778Q96MU6 729 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 C6orf62Q9GZU0 229 aaPredicted RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 SOX17Q9H6I2 414 aaPredicted RBP10.85□□□□□ -0.67
LSM3-201ENST00000306024 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.85□□□□□ -0.673e-6■■■□□ 15.3
LSM3-201ENST00000306024 DPP7Q9UHL4 492 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 ZNF221Q9UK13 617 aa10.85□□□□□ -0.67
LSM3-201ENST00000306024 CDH1P12830 882 aa10.84□□□□□ -0.67
LSM3-201ENST00000306024 GOT1P17174 413 aa10.84□□□□□ -0.67
LSM3-201ENST00000306024 HDCP19113 662 aa10.84□□□□□ -0.67
LSM3-201ENST00000306024 BMPR1AP36894 532 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms