RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 HUNKP57058 714 aa12.78□□□□□ -0.36
COL3A1-201ENST00000304636 CARTPTQ16568 116 aa12.78□□□□□ -0.36
COL3A1-201ENST00000304636 PABPC1LQ4VXU2 614 aaKnown RBP12.78□□□□□ -0.36
COL3A1-201ENST00000304636 RHBDF2Q6PJF5 856 aa12.78□□□□□ -0.36
COL3A1-201ENST00000304636 DET1Q7L5Y6 550 aa12.78□□□□□ -0.36
COL3A1-201ENST00000304636 METTL3Q86U44 580 aaKnown RBP12.78□□□□□ -0.36
COL3A1-201ENST00000304636 KIFC1Q9BW19 673 aa12.78□□□□□ -0.36
COL3A1-201ENST00000304636 PCDHAC1Q9H158 963 aa12.78□□□□□ -0.36
COL3A1-201ENST00000304636 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.77□□□□□ -0.36
COL3A1-201ENST00000304636 FAM159BA6NKW6 160 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 PGRMC2O15173 223 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 XRCC1P18887 633 aaPredicted RBP12.77□□□□□ -0.36
COL3A1-201ENST00000304636 TUBA4AP68366 448 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 TNFAIP8L3Q5GJ75 292 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 HECTD3Q5T447 861 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 STYXQ8WUJ0 223 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 AZIN2Q96A70 460 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 TMCO6Q96DC7 493 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 DIRAS2Q96HU8 199 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 TSSK3Q96PN8 268 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 YME1L1Q96TA2 773 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 NTPCRQ9BSD7 190 aaKnown RBP12.77□□□□□ -0.36
COL3A1-201ENST00000304636 PCDHAC2Q9Y5I4 1007 aa12.77□□□□□ -0.36
COL3A1-201ENST00000304636 TNFRSF11BO00300 401 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 UGT1A6P19224 532 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 UGT1A1P22309 533 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 UGT1A4P22310 534 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 UGT1A3P35503 534 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 UGT1A5P35504 534 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 PTPN5P54829 565 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 HKDC1Q2TB90 917 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 DEF8Q6ZN54 512 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 CLHC1Q8NHS4 586 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 ZDHHC6Q9H6R6 413 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 NFKBIL1Q9UBC1 381 aaPredicted RBP12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TCRBV7S3A2A0A539 114 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 EI24O14681 340 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 SMIM10L2AP0DMW4 78 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 SMIM10L2BP0DMW5 78 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 CA9Q16790 459 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 OGFOD2Q6N063 350 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TAPT1Q6NXT6 567 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TRAPPC5Q8IUR0 188 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TMEM126BQ8IUX1 230 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 ZNF557Q8N988 423 aaPredicted RBP12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TTC29Q8NA56 475 aaPredicted RBP12.77□□□□□ -0.37
COL3A1-201ENST00000304636 PPCDCQ96CD2 204 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 KCNE2Q9Y6J6 123 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 SPEF2Q9C093 1822 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 IGKV6D-41A0A0C4DH26 115 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 ADAMTS3O15072 1205 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TRBC1P01850 177 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 TGFBR2P37173 567 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 SREBF2Q12772 1141 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 CNSTQ6PJW8 725 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 USP43Q70EL4 1123 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 C7orf43Q8WVR3 580 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 CHCHD6Q9BRQ6 235 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 MRPL9Q9BYD2 267 aaKnown RBP12.77□□□□□ -0.37
COL3A1-201ENST00000304636 ABCG8Q9H221 673 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 HIPK3Q9H422 1215 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL3A1-201ENST00000304636 DTLQ9NZJ0 730 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 FZD10Q9ULW2 581 aa12.77□□□□□ -0.37
COL3A1-201ENST00000304636 RPLP0P05388 317 aaKnown RBP12.76□□□□□ -0.37
COL3A1-201ENST00000304636 BMP7P18075 431 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 TIE1P35590 1138 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 MAPKAPK2P49137 400 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 COPZ1P61923 177 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 PARP15Q460N3 678 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 MFSD4BQ5TF39 518 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 LCN1P1Q5VSP4 162 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 ESRP1Q6NXG1 681 aaKnown RBP12.76□□□□□ -0.37
COL3A1-201ENST00000304636 ARMCX6Q7L4S7 300 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 MON1AQ86VX9 555 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 ADAM2Q99965 735 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 CCDC3Q9BQI4 270 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 SLC25A51Q9H1U9 297 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 TPK1Q9H3S4 243 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 TMEM138Q9NPI0 162 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 AKAP7Q9P0M2 348 aaPredicted RBP12.76□□□□□ -0.37
COL3A1-201ENST00000304636 CELF2O95319 508 aaKnown RBP12.76□□□□□ -0.37
COL3A1-201ENST00000304636 IL18Q14116 193 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 KCNJ11Q14654 390 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 SKIV2LQ15477 1246 aaKnown RBP12.76□□□□□ -0.37
COL3A1-201ENST00000304636 GPAT3Q53EU6 434 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 PITRM1Q5JRX3 1037 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 TSTD2Q5T7W7 516 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 TRPV1Q8NER1 839 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 OR5K1Q8NHB7 308 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 SUN5Q8TC36 379 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 IRGQQ8WZA9 623 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 PREBQ9HCU5 417 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 COL1A2P08123 1366 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 A0A088AWK7 358 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 FPGTO14772 594 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 MATN3O15232 486 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 KHDRBS3O75525 346 aaKnown RBP12.76□□□□□ -0.37
COL3A1-201ENST00000304636 AP2A2O94973 939 aa12.76□□□□□ -0.37
COL3A1-201ENST00000304636 C9P02748 559 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms