RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 STX16-NPEPL1H3BU86 382 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 PSMD12O00232 456 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 STX16O14662 325 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 AZIN1O14977 448 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 SORBS2O94875 1100 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 CDK14O94921 469 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 PRAMEF12O95522 483 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 BAG2O95816 211 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 GLUD1P00367 558 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 TRBC1P01850 177 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 ENO3P13929 434 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 ACADSP16219 412 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 HTRA4P83105 476 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 LCP2Q13094 533 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 STX5Q13190 355 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 CAMK2BQ13554 666 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 CCNIQ14094 377 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 FASTKQ14296 549 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 PPP1R3AQ16821 1122 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 UGT3A2Q3SY77 523 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 ANKS6Q68DC2 871 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 TXNDC11Q6PKC3 985 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 LARP4Q71RC2 724 aaKnown RBP eCLIP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 SLC26A7Q8TE54 656 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 TRPC4APQ8TEL6 797 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 N4BP2L2Q92802 583 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 EID2BQ96D98 161 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 TTC1Q99614 292 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 SLC30A3Q99726 388 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 SLC46A2Q9BY10 475 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 P2RY12Q9H244 342 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 WDR41Q9HAD4 459 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 CLEC4EQ9ULY5 219 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 SCN8AQ9UQD0 1980 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 CXorf51AA0A1B0GTR3 108 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 LRRC14BA6NHZ5 514 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 PRMT5O14744 637 aaPredicted RBP12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 CCL16O15467 120 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 LINC00271P0C7V0 271 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 SERPINA4P29622 427 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 ATP4BP51164 291 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 CLCQ05315 142 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 KANK2Q63ZY3 851 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 FAM151BQ6UXP7 276 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 GK5Q6ZS86 529 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 ADGRG6Q86SQ4 1221 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 EEF1AKMT1Q8WVE0 214 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 CLP1Q92989 425 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 NSUN5Q96P11 429 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 CDRT15Q96T59 188 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 TNKS2Q9H2K2 1166 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 SARS2Q9NP81 518 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 UTP6Q9NYH9 597 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 APPL1Q9UKG1 709 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 IKZF3Q9UKT9 509 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 PPM1HQ9ULR3 514 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 INSL6Q9Y581 213 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 DNAJC15Q9Y5T4 150 aa12.83□□□□□ -0.36
SPTLC1-201ENST00000262554 CAPN8A6NHC0 703 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 KLK8O60259 260 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SNX2O60749 519 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CRCPO75575 148 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 PRAMEF1O95521 474 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 FGF19O95750 216 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 TSPAN12O95859 305 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 RPS17P08708 135 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 ZNF7P17097 686 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 STX1BP61266 288 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SNRPD1P62314 119 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 PTK2BQ14289 1009 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 MMEL1Q495T6 779 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 AGKQ53H12 422 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 TRIM68Q6AZZ1 485 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 PTRHD1Q6GMV3 140 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 FBXO46Q6PJ61 603 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 NECAB2Q7Z6G3 386 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 GPSM1Q86YR5 675 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CPNE9Q8IYJ1 553 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 OR2AP1Q8NGE2 309 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 TWIST2Q8WVJ9 160 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 PYDC1Q8WXC3 89 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 NPAS2Q99743 824 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 TCF25Q9BQ70 676 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 C1QTNF3Q9BXJ4 246 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CLPBQ9H078 707 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SMG9Q9H0W8 520 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 BCAP29Q9UHQ4 241 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 DHRS7Q9Y394 339 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 ATP6AP2A0A1C7CYW4 349 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 PPP6CO00743 305 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CFLARO15519 480 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 GPR39O43194 453 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 ATP6AP2O75787 350 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 FGBP02675 491 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 ITGALP20701 1170 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 RPS3P23396 243 aaKnown RBP eCLIP12.82□□□□□ -0.363e-6■■□□□ 12.7
SPTLC1-201ENST00000262554 GKP32189 559 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 HNF1BP35680 557 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CLCN7P51798 805 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 PIGGQ5H8A4 983 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms